Co-expression analysis

Gene ID	ZmAffx.1199.2.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g48610: phosphoesterase family protein (HF=1e-8)
Module size	29 genes
NF	0.30
%ile	27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.96	ZmAffx.1199.2.A1_at	AI691435	-	-	1e-8	At3g48610	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.9646.1.A1_at	BM334563	negatively light-regulated protein	-	5e+0	At1g32700	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.4640.1.A1_at	CF623843	KH domain containing protein	-	3e+0	At2g31085	CLE6 (CLAVATA3/ESR-RELATED 6)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.17785.1.A1_at	CK369198	-	-	4e+0	At5g20100	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.17784.1.S1_at	CK370703	-	-	3e-2	At1g53030	cytochrome c oxidase copper chaperone family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.5932.1.S1_at	AB071695.1	response regulator 10	-	3e-1	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.16356.1.A2_at	CF006790	-	-	8e-17	At4g24920	protein transport protein SEC61 gamma subunit, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.5038.2.S1_at	AY112323.1	-	-	1e+0	At4g19630	heat shock factor protein-related / heat shock transcription factor-related	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.12890.1.S1_at	CA401159	BES1/BZR1 protein	-	2e+0	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.17521.1.S1_at	CK370540	complex 1 protein containing protein	-	2e+0	At4g39340	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.9900.1.A1_at	BM351046	-	-	2e-2	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.2668.1.A1_at	CB334210	hypothetical protein LOC100193351	-	4e+0	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	ZmAffx.936.1.S1_at	AI677620	-	-	3e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.11328.1.A1_at	CA401316	hypothetical protein LOC100274553	-	6e+0	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.19060.1.A1_at	CO533295	ruvB-like 2	-	3e-1	At2g23890	5' nucleotidase family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.13356.1.S1_at	AY105810.1	-	-	2e-7	At3g20320	TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.6268.1.A1_at	BM073308	hypothetical protein LOC100192813	-	2e-3	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.14120.1.S1_at	AY105834.1	-	-	7e-30	At1g71220	EBS1 (EMS-mutagenized bri1 suppressor 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.280.1.A1_at	U58208.1	Binding protein homolog1	-	0	At5g42020	BIP2	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.98	Zm.1360.1.S1_x_at	AW927383	hypothetical protein LOC100276510	-	6e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.98	Zm.9924.1.A1_at	BM332499	-	-	8e-2	At5g11630	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.98	Zm.18518.1.A1_at	CF631091	hypothetical protein LOC100280282	-	1e-1	At2g02040	PTR2 (PEPTIDE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.98	Zm.8612.1.A1_at	BM074907	hypothetical protein LOC100278970	-	6e+0	At3g27380	SDH2-1	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	ZmAffx.816.1.A1_at	AI770437	-	-	3e+0	At3g12977	DNA binding	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.98	Zm.2034.1.S1_at	BE123271	hypothetical protein LOC100277458	-	1e+0	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.1	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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