Co-expression analysis

Gene ID	ZmAffx.1187.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g29033: - (HF=3e+0)
Module size	6 genes
NF	0.45
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.83	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.79	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.82	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.81	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.82	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.84	ZmAffx.273.1.A1_at	AI670401	-	-	1e+1	At3g22900	NRPD7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.4	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.203781.1.S1_at, orthologous to the query gene, ZmAffx.1187.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.7	PtpAffx.203781.1.S1_at	At4g29033	hypothetical protein	-	2e-8	At4g21220	bacterial transferase hexapeptide repeat-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	PtpAffx.25566.1.S1_at	At4g29033	hypothetical protein	-	5e-20	At4g26780	AR192	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.210943.1.S1_at	At4g29033	hypothetical protein	-	3e-17	At1g08845	structural constituent of ribosome	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	PtpAffx.9129.3.S1_s_at	At4g29033	hypothetical protein	-	3e-5	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.158769.1.S1_s_at	At4g29033	hypothetical protein	-	3e-5	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.3747.1.S1_at	At4g29033	hypothetical protein	-	3e-25	At3g15000	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	PtpAffx.29901.1.S1_at	At4g29033	hypothetical protein	-	3e-87	At4g24830	arginosuccinate synthase family	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	Ptp.1795.1.A1_at	At4g29033	hypothetical protein	-	3e-2	At3g59650	mitochondrial ribosomal protein L51/S25/CI-B8 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.2382.2.A1_s_at	At4g29033	hypothetical protein	-	2e-61	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.5315.1.A1_s_at	At4g29033	hypothetical protein	-	1e-90	At4g09800	RPS18C (S18 RIBOSOMAL PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	Ptp.4048.1.S1_s_at	At4g29033	hypothetical protein	-	2e-27	At3g18740	60S ribosomal protein L30 (RPL30C)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.1106.1.A1_s_at	At4g29033	-	-	3e-17	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.1417.1.S1_x_at	At4g29033	hypothetical protein	-	2e-59	At5g10360	EMB3010 (embryo defective 3010)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.993.2.S1_s_at	At4g29033	hypothetical protein	-	2e-101	At3g04400	emb2171 (embryo defective 2171)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.118020.1.S1_at	At4g29033	hypothetical protein	-	1e+0	At5g07930	MCT2 (mei2 C-Terminal RRM only like 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.609.1.A1_s_at	At4g29033	hypothetical protein	-	6e-28	At2g19730	60S ribosomal protein L28 (RPL28A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.1555.1.S1_x_at	At4g29033	hypothetical protein	-	7e-31	At3g10950	60S ribosomal protein L37a (RPL37aB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.14802.1.A1_s_at	At4g29033	hypothetical protein	-	5e-62	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.5838.1.S1_s_at	At4g29033	hypothetical protein	-	1e-44	At4g27090	60S ribosomal protein L14 (RPL14B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.6728.1.S1_at	At4g29033	hypothetical protein	-	2e-13	At4g32910	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.626.1.S1_a_at	At4g29033	hypothetical protein	-	3e-27	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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