Co-expression analysis

Gene ID	ZmAffx.1187.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g29033: - (HF=3e+0)
Module size	6 genes
NF	0.45
%ile	54.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.83	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.79	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.82	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.81	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.82	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.84	ZmAffx.273.1.A1_at	AI670401	-	-	1e+1	At3g22900	NRPD7	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.4	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C143000028_at, orthologous to the query gene, ZmAffx.1187.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	PsAffx.C143000028_at	At4g29033	-	-	1e+1	At5g57330	aldose 1-epimerase family protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	PsAffx.C86000041_at	At4g29033	-	-	2e-1	At1g31330	PSAF (photosystem I subunit F)	O.I.	H.G.	S.X.	Please select
0.03	5.8	GmaAffx.90658.1.S1_at	At4g29033	-	-	2e-18	At4g14580	CIPK4 (CBL-interacting protein kinase 4)	O.I.	H.G.	S.X.	Please select
0.02	4.5	GmaAffx.90753.1.S1_x_at	At4g29033	-	-	1e+0	At5g49300	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.90399.1.S1_at	At4g29033	-	-	4e-13	At1g14260	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	PsAffx.psZG005xN22f_s_at	At4g29033	-	-	9e+0	At5g14602	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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