Co-expression analysis

Gene ID	ZmAffx.1177.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g04445: zinc finger (C2H2 type) family protein (HF=7e-2)
Module size	23 genes
NF	0.28
%ile	24.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.96	ZmAffx.1177.1.S1_at	AW927462	-	-	7e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.17189.1.A1_at	BM268883	-	-	5e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.2548.1.A1_at	AY106256.1	-	-	2e-26	At4g02570	ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.7750.4.S1_at	AW499152	-	-	3e-28	At1g75780	TUB1	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.15280.2.A1_at	BM382215	-	-	9e+0	At5g19650	OFP8 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.14898.1.A1_x_at	BM351319	-	-	4e+0	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.18084.1.A1_at	CD997940	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.6828.1.A1_at	AI396546	-	-	2e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	ZmAffx.824.1.S1_at	AI770504	-	-	3e+0	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.15489.1.A1_at	CD219260	hypothetical protein LOC100191928 /// hypothetical protein LOC100192092	-	2e-5	At3g18170	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.4774.1.A1_at	CF637265	hypothetical protein LOC100191958	-	1e+0	At3g26360	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.11611.1.A1_at	BM379298	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	ZmAffx.398.1.A1_at	AI676826	-	-	3e+0	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.98	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	ZmAffx.536.1.A1_at	AI711796	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.17742.1.A1_at	AW042536	hypothetical protein LOC100279932	-	6e-9	At5g51220	ubiquinol-cytochrome C chaperone family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	ZmAffx.1052.1.A1_at	AI881839	-	-	3e+0	At1g75090	methyladenine glycosylase family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.18607.1.A1_at	CK826821	-	-	2e+0	At3g29720	transferase-related	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.98	Zm.2397.1.A1_at	AY104240.1	nucleolin	-	2e+0	At1g64710	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.547.1.A1_at	CK827104	glutathione transferase17	-	1e-1	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.98	ZmAffx.562.1.A1_at	AI714592	-	-	3e+0	At4g17483	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.98	Zm.14524.1.S1_at	AY104558.1	hypothetical protein LOC100272454	-	8e-3	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.6	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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