Co-expression analysis

Gene ID ZmAffx.116.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g47700: 60S acidic ribosomal protein P1 (RPP1C) (HF=3e+0)
Module size 6 genes
NF 0.38
%ile 41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99ZmAffx.116.1.A1_atAI665610--3e+0At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.6785.80.98Zm.18107.1.S1_a_atAY536125.1meg5 protein-3e-1At5g22190unknown proteinO.I.H.G.S.X.
0.5571.60.98Zm.6556.1.A1_atAY109683.1hypothetical protein LOC100273410-7e-19At2g34160nucleic acid bindingO.I.H.G.S.X.
0.4048.50.99Zm.2688.2.A1_a_atCK986048hypothetical protein LOC100273855-5e+0At3g25120mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.2419.80.99Zm.17591.2.S1_atCK347917--2e-52At1g14670endomembrane protein 70, putativeO.I.H.G.S.X.
0.158.60.99Zm.17775.1.S1_atCF62760250S ribosomal protein L12-2-5e+0At4g14358-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7389.90.97Zm.5346.1.A1_atAY110712.1--1e-3At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.6785.80.97Zm.11368.1.A1_atCB350900--5e+0At1g52050jacalin lectin family proteinO.I.H.G.S.X.
0.5065.70.96Zm.9388.1.A1_atBM268498--6e-2At3g46613RTFL4 (ROTUNDIFOLIA LIKE 4)O.I.H.G.S.X.
0.5065.70.98Zm.3792.1.S1_atCA826763hypothetical protein LOC100276631-9e-2At2g45450ZPR1 (LITTLE ZIPPER 1)O.I.H.G.S.X.
0.4759.90.97Zm.12052.1.A1_atAI891193--1e-1At2g26140ftsh4 (FtsH protease 4)O.I.H.G.S.X.
0.4658.40.97Zm.10054.1.A1_atBM378790--2e-1At1g09520protein binding / zinc ion bindingO.I.H.G.S.X.
0.4455.70.95Zm.148.1.S1_atL14835.1hypothetical LOC542242-2e+0At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.4455.70.96Zm.11750.1.A1_atCK826706hypothetical protein LOC100278014-2e+0At3g12650unknown proteinO.I.H.G.S.X.
0.4455.70.99ZmAffx.932.1.S1_atAI795506--3e+0At5g22430unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.16207.1.A1_atAW355980Phosphoglucomutase 1-6e-43At1g23190phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putativeO.I.H.G.S.X.
0.4048.50.97Zm.16826.1.A1_atCF752095--2e+0At4g01420CBL5 (CALCINEURIN B-LIKE PROTEIN 5)O.I.H.G.S.X.
0.4048.50.97Zm.4940.2.S1_a_atAI979640--2e-21At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.4048.50.98Zm.13758.1.S1_atCO518279UDP-glucuronic acid decarboxylase 1-1e+0At3g12130KH domain-containing protein / zinc finger (CCCH type) family proteinO.I.H.G.S.X.
0.4048.50.99ZmAffx.932.1.A1_atAI795506--3e+0At5g22430unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.16286.1.A1_atCO520397--5e-10At2g23390-O.I.H.G.S.X.
0.3641.30.97Zm.8067.1.A1_atBM072815hypothetical protein LOC100193385-9e-19At1g55340unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.14970.1.S1_atBM378195Spindle and kinetochore-associated protein 1 homolog-1e-4At3g60660unknown proteinO.I.H.G.S.X.
0.3641.30.99Zm.9335.1.A1_atBM268136hypothetical protein LOC100273605-2e-2At2g40580protein kinase family proteinO.I.H.G.S.X.
0.3336.00.98Zm.2350.1.A1_atAW355965--1e+0At5g47080CKB1O.I.H.G.S.X.
0.3233.40.95Zm.9925.1.A1_atBM348442--3e-1At2g40765unknown proteinO.I.H.G.S.X.
0.3131.60.98Zm.11878.1.A1_atAY110052.1tropinone reductase-4e-2At2g29260tropinone reductase, putative / tropine dehydrogenase, putativeO.I.H.G.S.X.
0.3131.60.98Zm.14073.1.S1_s_atCD99544060S ribosomal protein L28-8e-9At2g1973060S ribosomal protein L28 (RPL28A)O.I.H.G.S.X.
0.3131.60.98Zm.13846.1.S1_atAY103949.1--6e-1At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.3131.60.99Zm.8426.1.A1_atBM347536hypothetical protein LOC100216659-8e-1At1g71691GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.3029.80.95ZmAffx.1005.1.A1_atAI881362Lipoxygenase-3e+0At1g04130tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.2928.10.98Zm.8149.2.A1_atBM072723--6e+0At4g14640CAM8 (CALMODULIN 8)O.I.H.G.S.X.
0.2724.60.96Zm.15506.1.A1_atCD441293--7e-2At3g24050GATA transcription factor 1 (GATA-1)O.I.H.G.S.X.
0.2724.60.97Zm.4120.1.A1_atBG266628--1e-1At3g02130RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.799.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM206330Lower pulvinus 2 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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