Co-expression analysis

Gene ID	ZmAffx.116.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g47700: 60S acidic ribosomal protein P1 (RPP1C) (HF=3e+0)
Module size	6 genes
NF	0.38
%ile	41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	ZmAffx.116.1.A1_at	AI665610	-	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18107.1.S1_a_at	AY536125.1	meg5 protein	-	3e-1	At5g22190	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.6556.1.A1_at	AY109683.1	hypothetical protein LOC100273410	-	7e-19	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.2688.2.A1_a_at	CK986048	hypothetical protein LOC100273855	-	5e+0	At3g25120	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.99	Zm.17591.2.S1_at	CK347917	-	-	2e-52	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.99	Zm.17775.1.S1_at	CF627602	50S ribosomal protein L12-2	-	5e+0	At4g14358	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1610676_at, orthologous to the query gene, ZmAffx.116.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	1610676_at	At5g47700	hypothetical protein LOC100267604	-	1e+0	At4g13360	catalytic	O.I.	H.G.	S.X.	Please select
0.77	92.3	1618562_at	At5g47700	hypothetical protein LOC100258848	-	8e-3	At4g02450	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1620599_at	At5g47700	hypothetical protein LOC100246051 /// hypothetical protein LOC100256250	-	5e+0	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1612461_at	At5g47700	hypothetical protein LOC100257379	-	1e-1	At3g10220	tubulin folding cofactor B	O.I.	H.G.	S.X.	Please select
0.60	81.9	1617105_at	At5g47700	similar to putative calcium-dependent protein kinase CPK1 adapter protein 2	-	6e-20	At5g66250	kinectin-related	O.I.	H.G.	S.X.	Please select
0.42	60.1	1616044_at	At5g47700	similar to mRNA capping enzyme family protein	-	7e-13	At3g09100	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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