Co-expression analysis

Gene ID	ZmAffx.116.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g47700: 60S acidic ribosomal protein P1 (RPP1C) (HF=3e+0)
Module size	6 genes
NF	0.38
%ile	41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	ZmAffx.116.1.A1_at	AI665610	-	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18107.1.S1_a_at	AY536125.1	meg5 protein	-	3e-1	At5g22190	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.6556.1.A1_at	AY109683.1	hypothetical protein LOC100273410	-	7e-19	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.2688.2.A1_a_at	CK986048	hypothetical protein LOC100273855	-	5e+0	At3g25120	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.99	Zm.17591.2.S1_at	CK347917	-	-	2e-52	At1g14670	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.99	Zm.17775.1.S1_at	CF627602	50S ribosomal protein L12-2	-	5e+0	At4g14358	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the wheat gene, Ta.15576.1.S1_at, orthologous to the query gene, ZmAffx.116.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.15576.1.S1_at	At5g47700	-	-	1e+0	At2g31550	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.14126.1.S1_at	At5g47700	-	-	5e-4	At1g15270	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.1258.1.S1_a_at	At5g47700	S-adenosyl-L-homocysteine hydrolase	-	6e-95	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.28350.1.S1_a_at	At5g47700	14-3-3 protein	-	3e-28	At3g02520	GRF7 (GENERAL REGULATORY FACTOR 7)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.28783.1.S1_x_at	At5g47700	single-stranded nucleic acid binding protein	-	5e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.20393.1.S1_x_at	At5g47700	-	-	3e-1	At1g78320	ATGSTU23 (GLUTATHIONE S-TRANSFERASE TAU 23)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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