CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.116.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g47700: 60S acidic ribosomal protein P1 (RPP1C) (HF=3e+0)

Module size 6 genes

NF 0.38

%ile 41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.99 ZmAffx.116.1.A1_at AI665610 - - 3e+0 At5g47700 60S acidic ribosomal protein P1 (RPP1C) O.I. H.G. S.X.
0.67 85.8 0.98 Zm.18107.1.S1_a_at AY536125.1 meg5 protein - 3e-1 At5g22190 unknown protein O.I. H.G. S.X.
0.55 71.6 0.98 Zm.6556.1.A1_at AY109683.1 hypothetical protein LOC100273410 - 7e-19 At2g34160 nucleic acid binding O.I. H.G. S.X.
0.40 48.5 0.99 Zm.2688.2.A1_a_at CK986048 hypothetical protein LOC100273855 - 5e+0 At3g25120 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein O.I. H.G. S.X.
0.24 19.8 0.99 Zm.17591.2.S1_at CK347917 - - 2e-52 At1g14670 endomembrane protein 70, putative O.I. H.G. S.X.
0.15 8.6 0.99 Zm.17775.1.S1_at CF627602 50S ribosomal protein L12-2 - 5e+0 At4g14358 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 99.0 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6 98.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the rice gene, Os03g0131300, orthologous to the query gene, ZmAffx.116.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 Os03g0131300 At5g47700 - Ubiquitin domain containing protein 5e-12 At2g17200 ubiquitin family protein O.I. H.G. S.X.
0.43 55.4 Os06g0583400 At5g47700 - Histone deacetylase HDAC1 6e-61 At4g38130 HD1 (HISTONE DEACETYLASE 1) O.I. H.G. S.X.
0.31 34.5 Os03g0261500 At5g47700 - Heat shock protein DnaJ family protein 3e-9 At5g22080 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.17 12.6 Os01g0258700 At5g47700 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 5e-6 At2g47850 zinc finger (CCCH-type) family protein O.I. H.G. S.X.
0.12 7.2 Os05g0295800 At5g47700 - Glyoxalase I (EC 4.4.1.5) 2e-10 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.11 6.5 Os04g0531700 At5g47700 - Glucose/ribitol dehydrogenase family protein 4e+0 At4g23430 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.09 4.9 Os03g0747200 At5g47700 - Conserved hypothetical protein 6e-2 At1g20050 HYD1 (HYDRA1) O.I. H.G. S.X.
0.08 4.2 Os09g0482400 At5g47700 - Heat shock protein 82 4e+0 At5g45360 F-box family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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