CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.1145.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g67570: unknown protein (HF=1e-2)

Module size 6 genes

NF 0.03

%ile 1.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 0.67 ZmAffx.1145.1.A1_at AW400072 - - 1e-2 At1g67570 unknown protein O.I. H.G. S.X.
0.14 7.7 0.86 Zm.16593.1.A1_a_at CF629794 hypothetical protein LOC100192949 - 5e-20 At5g61170 40S ribosomal protein S19 (RPS19C) O.I. H.G. S.X.
0.12 5.9 0.88 Zm.12888.1.A1_at AY106765.1 hypothetical protein LOC100191869 - 9e-2 At3g52280 GTE6 (GENERAL TRANSCRIPTION FACTOR GROUP E6) O.I. H.G. S.X.
0.06 2.3 0.86 Zm.12136.1.A1_at AY109005.1 hypothetical protein LOC100276353 - 5e-1 At2g28790 osmotin-like protein, putative O.I. H.G. S.X.
0.02 0.7 0.68 Zm.18365.1.A1_at CF626505 - - 1e-3 At1g13750 calcineurin-like phosphoesterase family protein O.I. H.G. S.X.
0.01 0.3 0.67 ZmAffx.625.1.S1_at AI715053 - - 1e+1 At5g13340 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8 98.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6 98.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1 94.3 GSM320466 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g67570, orthologous to the query gene, ZmAffx.1145.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At1g67570 843078 unknown protein F:unknown;P:unknown;C:nucleus;PO O.I. H.G. S.X.
0.67 81.6 At5g07720 830665 galactosyl transferase GMA12/MNN10 family protein F:transferase activity, transferring glycosyl groups, transferase activity;P:biological_process unknown;C:integral to membrane;PFO O.I. H.G. S.X.
0.20 14.4 At1g67410 843061 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF O.I. H.G. S.X.
0.18 11.4 At1g71940 843525 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFA O.I. H.G. S.X.
0.13 5.8 At5g59740 836095 UDP-galactose/UDP-glucose transporter-related F:galactose transmembrane transporter activity;P:unknown;C:unknown;MFPOB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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