Co-expression analysis

Gene ID	ZmAffx.1122.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g14220: ribonuclease T2 family protein (HF=4e+0)
Module size	6 genes
NF	0.06
%ile	2.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.92	ZmAffx.1122.1.S1_at	AW288748	-	-	4e+0	At1g14220	ribonuclease T2 family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.9510.2.A1_a_at	BM268906	-	-	9e-1	At5g53810	O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.95	Zm.13574.1.A1_at	AY107909.1	-	-	2e-12	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.93	ZmAffx.1084.1.S1_at	AI987532	-	-	4e+0	At1g31760	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.95	Zm.14591.1.S1_at	CF006266	triosephosphate isomerase, cytosolic	-	3e-9	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.94	Zm.391.1.S1_at	U33318.1	isoflavone reductase-like1	-	2e-4	At1g75290	oxidoreductase, acting on NADH or NADPH	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.9	98.9	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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