Co-expression analysis

Gene ID ZmAffx.1116.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g55570: unknown protein (HF=5e+0)
Module size 10 genes
NF 0.64
%ile 85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.72ZmAffx.1116.1.A1_atAI670638--5e+0At5g55570unknown proteinO.I.H.G.S.X.
0.7389.90.78Zm.14534.1.A1_atCB278150--2e+0At3g08940LHCB4.2 (light harvesting complex PSII)O.I.H.G.S.X.
0.7288.60.71Zm.2199.1.A1_a_atAI734621transaldolase 2-1e-9At5g13420transaldolase, putativeO.I.H.G.S.X.
0.7188.20.83Zm.8073.1.A1_atAI691948hypothetical protein LOC100277184-2e-5At5g03455CDC25O.I.H.G.S.X.
0.6481.70.77Zm.13624.1.A1_atCF626206hypothetical protein LOC100279244-7e+0At5g53830VQ motif-containing proteinO.I.H.G.S.X.
0.5976.10.75Zm.2199.2.S1_atCA404051IWS1 C-terminus family protein-2e-17At1g32130-O.I.H.G.S.X.
0.5976.10.77Zm.3390.1.A1_atCB816151hypothetical protein LOC100272309-2e-10At5g42990UBC18 (ubiquitin-conjugating enzyme 18)O.I.H.G.S.X.
0.5674.40.77Zm.19305.1.A1_atCO524946hypothetical protein LOC100191620-1e+0At1g70895CLE17 (CLAVATA3/ESR-RELATED 17)O.I.H.G.S.X.
0.5674.40.77Zm.14516.1.S1_atCA404692transcription initiation factor TFIID subunit 10-3e-2At4g31720TAFII15 (TBP-ASSOCIATED FACTOR II 15)O.I.H.G.S.X.
0.4861.30.72Zm.16322.1.A1_atBG873909hypothetical protein LOC100280029-2e+0At5g62330-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.299.1GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.597.1GSM202310B73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
4.996.7GSM202316Mo17xB73 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
4.596.3GSM202311Mo17xB73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
4.396.1GSM202320B73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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