Co-expression analysis

Gene ID ZmAffx.1113.1.A1_at
Gene name Hypothetical protein LOC100216906
Homology with ArabidopsisSimilar to At4g33550: lipid binding (HF=4e+0)
Module size 6 genes
NF 0.68
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.71ZmAffx.1113.1.A1_atAI600810Hypothetical protein LOC100216906-4e+0At4g33550lipid bindingO.I.H.G.S.X.
0.6785.80.71Zm.910.1.A1_atCK347167--7e-13At2g45640SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18)O.I.H.G.S.X.
0.6785.80.71Zm.7906.1.A1_atBM268263zinc finger homeodomain protein 1-6e-3At3g28917MIF2 (MINI ZINC FINGER 2)O.I.H.G.S.X.
0.6785.80.78Zm.17634.1.A1_atCK367914--9e-1At4g19270unknown proteinO.I.H.G.S.X.
0.5065.70.73Zm.818.2.A1_atCO531833Hypothetical protein LOC100216560-1e+1At5g67490unknown proteinO.I.H.G.S.X.
0.3641.30.76Zm.14283.1.A1_atCF63669860S ribosomal protein L19-1e-48At4g0223060S ribosomal protein L19 (RPL19C)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.598.1GSM320462protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.997.9GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320458protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320472protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, HgAffx.22572.1.S1_at, orthologous to the query gene, ZmAffx.1113.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.6HgAffx.22572.1.S1_atAt4g33550--1e+1At4g22517-O.I.H.G.S.X.
0.4463.3Gma.5793.4.S1_x_atAt4g33550--8e-19At3g61430PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)O.I.H.G.S.X.
0.2939.0GmaAffx.92103.1.S1_s_atAt4g33550translationally controlled tumor-like protein-6e-28At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.2228.1GmaAffx.99.2.A1_s_atAt4g33550Translationally controlled tumor-like protein-3e-1At3g26670-O.I.H.G.S.X.
0.1013.0Gma.8354.1.S1_atAt4g33550--4e-22At3g03070NADH-ubiquinone oxidoreductase-relatedO.I.H.G.S.X.
0.1013.0Gma.6150.2.S1_s_atAt4g33550--1e-23At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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