Co-expression analysis

Gene ID	ZmAffx.1112.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to Atcg00040: - (HF=7e-13)
Module size	8 genes
NF	0.27
%ile	23.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	59.9	0.89	ZmAffx.1112.1.A1_s_at	AW231401	-	-	7e-13	Atcg00040	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.91	Zm.6578.1.A1_at	BG841096	hypothetical protein LOC100280400	-	2e+0	At4g11510	RALFL28 (ralf-like 28)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.92	Zm.6569.9.A1_x_at	AW091447	40S ribosomal protein S15	-	6e-37	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.93	Zm.6581.1.S1_at	BM379609	hypothetical protein LOC100272962	-	1e-5	At2g25070	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.91	Zm.7457.1.A1_at	BM078465	cold shock protein-1	-	1e+0	At5g40645	nitrate-responsive NOI protein, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.93	Zm.17573.1.A1_at	CF630261	regulatory subunit	-	8e+0	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.93	Zm.7863.1.S1_at	BM080209	hypothetical protein LOC100274181	-	2e-7	At3g56720	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.90	Zm.5805.2.A1_a_at	AI649736	filamentation temperature-sensitive H 2A /// filamentation temperature-sensitive H 2B	-	2e-56	At1g06430	FTSH8	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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