Co-expression analysis

Gene ID	ZmAffx.1110.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g06250: transcription factor (HF=8e-1)
Module size	38 genes
NF	0.35
%ile	35.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.5	0.93	ZmAffx.1110.1.A1_at	AW225256	-	-	8e-1	At5g06250	transcription factor	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.94	Zm.1572.1.A1_at	BQ538744	hypothetical protein LOC100217100	-	4e+0	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.13622.1.A1_at	AY107434.1	hypothetical protein LOC100274236	-	5e-2	At2g26350	PEX10	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.94	Zm.5738.1.S1_at	AI637188	-	-	6e-9	At3g20630	UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.94	Zm.8287.1.A1_at	AI737226	hypothetical protein LOC100192745	-	5e+0	At5g65740	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.11806.1.S1_at	BM380898	thylakoid lumenal 16.5 kDa protein	-	6e+0	At5g42146	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.95	Zm.5789.10.A1_x_at	AI737302	hypothetical protein LOC100192516	-	6e-14	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.2617.1.A1_at	AI964629	-	-	9e+0	At4g34190	SEP1 (STRESS ENHANCED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.95	Zm.13593.1.S1_at	AY107755.1	-	-	1e-8	At5g60620	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.95	Zm.5265.1.S1_at	CD441734	Hypothetical protein LOC100191432	-	4e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.2541.1.A1_at	CF629797	cortical cell-delineating protein	-	2e+0	At1g12090	ELP (EXTENSIN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.4710.1.A1_at	AI738125	hypothetical protein LOC100280041	-	3e+0	At4g34410	RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.95	Zm.19352.1.S1_at	CO532449	-	-	2e-16	At5g49990	xanthine/uracil permease family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.5274.1.S1_at	CD990782	triose phosphate/phosphate translocator, non-green plastid,chloroplast	-	4e-18	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.93	ZmAffx.189.2.A1_a_at	AI668397	hypothetical protein LOC100278348	-	8e-1	At1g70510	KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.95	Zm.4421.1.A1_at	AI987199	hypothetical protein LOC100279541	-	5e+0	At1g77640	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.95	Zm.13811.1.A1_at	AY104705.1	-	-	2e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.94	Zm.15418.1.A1_at	AY109016.1	Hypothetical protein LOC100191383	-	1e+1	At5g43570	serine-type endopeptidase inhibitor	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.95	Zm.186.1.S1_at	X71396.1	Bowman-Birk type wound-induced proteinase inhibitor WIP1	-	1e+0	At1g20000	TAF11b (TBP-ASSOCIATED FACTOR 11b)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.3263.1.A1_at	BG842806	nudix hydrolase 13	-	2e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.218.1.A1_at	AB016802.1	MAP kinase 5	-	2e-50	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.1481.1.A1_at	BG841913	hypothetical protein LOC100279302	-	1e-1	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.6321.1.A1_at	AI691388	-	-	2e-1	At3g17440	NPSN13 (NOVEL PLANT SNARE 13)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.292.1.S1_at	L46397.1	MADS box protein	-	2e-7	At3g61120	AGL13 (AGAMOUS-LIKE 13)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.810.1.S1_at	CF006379	-	-	6e-69	At5g45550	mob1/phocein family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.6950.1.A1_at	CO534341	PP7	-	9e-4	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.94	Zm.4105.1.A1_at	AI834696	-	-	3e+0	At5g22170	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.94	Zm.18409.1.A1_at	CO532665	hypothetical protein LOC100191200	-	5e+0	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.452.1.S1_at	CA404845	hypothetical LOC541772	-	6e-6	At4g02030	-	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.5922.1.A1_at	CN844887	DNA-binding protein S1FA2	-	2e+0	At1g16250	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.5196.1.A1_at	BM334572	PHD-finger family protein	-	1e+0	At2g24430	ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.5095.1.S1_s_at	BM269118	hypothetical protein LOC100192930	-	2e+0	At4g16447	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.3808.1.S1_at	CF010880	low-molecular-weight cysteine-rich protein LCR68	-	5e+0	At4g02850	phenazine biosynthesis PhzC/PhzF family protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.12342.1.A1_at	CD440814	DNA binding protein	-	5e-1	At4g16700	PSD1 (phosphatidylserine decarboxylase 1)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	ZmAffx.1004.1.A1_at	AI881348	-	-	3e+0	At3g32160	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.95	Zm.6649.1.S1_at	CK370002	hypothetical protein LOC100191356	-	8e-4	At3g05290	PNC1 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.2660.1.A1_at	AW066755	hypothetical protein LOC100194122	-	3e-1	At3g19180	ARC6H	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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