Co-expression analysis

Gene ID	ZmAffx.1108.1.A1_at
Gene name	hypothetical protein LOC100191835
Homology with Arabidopsis	Similar to At4g12810: F-box family protein (HF=3e+0)
Module size	6 genes
NF	0.82
%ile	98.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	ZmAffx.1108.1.A1_at	AW216343	hypothetical protein LOC100191835	-	3e+0	At4g12810	F-box family protein	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.93	ZmAffx.123.1.S1_at	AI665878	-	-	8e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.93	Zm.13932.1.A1_at	X63871.1	phosphoenolpyruvate carboxylase	-	3e-4	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	Zm.5897.1.A1_at	CA404128	hypothetical protein LOC100193663	-	9e-38	At3g47520	MDH (MALATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	ZmAffx.997.1.S1_at	AI857164	-	-	3e+0	At5g25990	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.95	Zm.1207.1.A1_at	CO525598	growth-regulating factor 11-like	-	6e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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