Co-expression analysis

Gene ID	ZmAffx.1103.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g43700: ATAUX2-11 (AUXIN INDUCIBLE 2-11) (HF=1e+1)
Module size	6 genes
NF	0.52
%ile	67.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	51.3	0.99	ZmAffx.1103.1.A1_at	AW191100	-	-	1e+1	At5g43700	ATAUX2-11 (AUXIN INDUCIBLE 2-11)	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	Zm.7054.1.S1_at	BM331766	actin-depolymerizing factor 6	-	6e-4	At5g59890	ADF4 (ACTIN DEPOLYMERIZING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	Zm.12300.1.A1_at	CF626520	ruBisCO large subunit-binding protein subunit alpha	-	1e-37	At2g28000	CPN60A (CHAPERONIN-60ALPHA)	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	Zm.12184.1.A1_at	BM380021	-	-	6e-10	At4g11960	PGRL1B (PGR5-Like B)	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	1.00	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.5	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.1	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig11814_at, orthologous to the query gene, ZmAffx.1103.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	Contig11814_at	At5g43700	-	-	2e+0	At5g44300	dormancy/auxin associated family protein	O.I.	H.G.	S.X.	Please select
0.84	94.3	Contig14057_at	At5g43700	-	-	6e-1	At5g14980	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig15941_at	At5g43700	-	-	2e-1	At2g38820	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig9668_at	At5g43700	-	-	4e+0	At5g51650	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig168_at	At5g43700	-	-	9e-14	At4g10340	LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig2284_at	At5g43700	-	-	5e-13	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.	Please select
0.63	80.3	HVSMEa0003G10r2_at	At5g43700	-	-	7e-1	At3g50070	CYCD3	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig18560_at	At5g43700	-	-	2e-9	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig14309_at	At5g43700	-	-	7e+0	At5g03390	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	HVSMEf0013J01r2_at	At5g43700	-	-	2e-2	At2g39415	F-box family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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