CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.1103.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g43700: ATAUX2-11 (AUXIN INDUCIBLE 2-11) (HF=1e+1)

Module size 6 genes

NF 0.52

%ile 67.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.42 51.3 0.99 ZmAffx.1103.1.A1_at AW191100 - - 1e+1 At5g43700 ATAUX2-11 (AUXIN INDUCIBLE 2-11) O.I. H.G. S.X.
0.60 77.8 1.00 Zm.7054.1.S1_at BM331766 actin-depolymerizing factor 6 - 6e-4 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) O.I. H.G. S.X.
0.53 69.1 1.00 Zm.12300.1.A1_at CF626520 ruBisCO large subunit-binding protein subunit alpha - 1e-37 At2g28000 CPN60A (CHAPERONIN-60ALPHA) O.I. H.G. S.X.
0.53 69.1 1.00 Zm.12184.1.A1_at BM380021 - - 6e-10 At4g11960 PGRL1B (PGR5-Like B) O.I. H.G. S.X.
0.50 65.7 1.00 Zm.15242.1.A1_at BM340075 - - 1e+1 At3g16712 unknown protein O.I. H.G. S.X.
0.42 51.3 1.00 ZmAffx.89.1.A1_at AI665353 hypothetical protein LOC100277768 - 1e+1 At5g20560 beta-1,3-glucanase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.5 99.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3 98.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0 98.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8 98.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8 98.6 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.1 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g43700, orthologous to the query gene, ZmAffx.1103.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.53 68.6 At5g43700 834390 ATAUX2-11 (AUXIN INDUCIBLE 2-11) Auxin inducible protein similar to transcription factors. O.I. H.G. S.X.
0.22 17.5 At4g01330 828117 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.16 8.8 At3g17100 820967 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus, chloroplast;PM O.I. H.G. S.X.
0.13 5.8 At1g01430 837247 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. H.G. S.X.
0.12 4.9 At1g70940 843432 PIN3 (PIN-FORMED 3) A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. O.I. H.G. S.X.
0.12 4.9 At3g01690 821094 - F:unknown;P:unknown;C:unknown;OBMPFVA O.I. H.G. S.X.
0.07 1.9 At4g35470 829699 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:plasma membrane;MPBOFAV O.I. H.G. S.X.
0.05 1.1 At2g46710 819283 rac GTPase activating protein, putative F:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFP O.I. H.G. S.X.
0.04 0.9 At3g04730 819633 IAA16 early auxin-induced (IAA16) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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