Co-expression analysis

Gene ID ZmAffx.1083.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g59830: PP2A-1 (HF=1e+0)
Module size 6 genes
NF 0.04
%ile 1.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.92ZmAffx.1083.1.S1_atAI974922--1e+0At1g59830PP2A-1O.I.H.G.S.X.
0.062.30.97Zm.18416.1.A1_atCO524449hypothetical protein LOC100193203-3e-1At3g27900unknown proteinO.I.H.G.S.X.
0.062.30.94Zm.12375.1.S1_atCA827265--3e+0At4g36460unknown proteinO.I.H.G.S.X.
0.020.70.94Zm.5210.1.A1_atAY105141.1IDP2492 protein-7e-4At3g47160protein binding / zinc ion bindingO.I.H.G.S.X.
0.020.70.94ZmAffx.397.1.S1_atAI676825--3e+0At5g63870PP7 (SERINE/THREONINE PHOSPHATASE 7)O.I.H.G.S.X.
0.010.30.96ZmAffx.1025.1.A1_atAI770423--8e-1At2g25312-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3641.30.95Zm.2517.3.A1_atAF371272.1zein /// zein polypeptidesL2b-9e-1At5g62360invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.3336.00.97Zm.2867.1.S1_atAY107561.1hypothetical protein LOC100280394-8e-2At1g28190unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.5240.1.S1_a_atCF637178hypothetical protein LOC100272335-1e-70At5g2244060S ribosomal protein L10A (RPL10aC)O.I.H.G.S.X.
0.2928.10.98Zm.18446.1.A1_atCO518758--3e-2At1g29800phosphoinositide binding / zinc ion bindingO.I.H.G.S.X.
0.2724.60.97Zm.5800.1.S1_atCK394709fiber protein Fb11-1e+0At3g09770zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2724.60.97Zm.1386.1.S1_atCF623901hypothetical protein LOC100191903-2e-10At1g43640AtTLP5 (TUBBY LIKE PROTEIN 5)O.I.H.G.S.X.
0.2115.50.97Zm.6564.1.A1_atAW231699hypothetical protein LOC100272535-2e+0At4g34850chalcone and stilbene synthase family proteinO.I.H.G.S.X.
0.2115.50.97Zm.6569.9.A1_atAW09144740S ribosomal protein S15-6e-37At5g0951040S ribosomal protein S15 (RPS15D)O.I.H.G.S.X.
0.2014.20.93Zm.3670.1.S1_x_atAY104105.1--1e+1At5g56369-O.I.H.G.S.X.
0.1912.80.96Zm.17254.1.A1_atBM350630--2e-3At2g39050hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.898.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.297.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM202310B73 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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