Co-expression analysis

Gene ID	ZmAffx.1078.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g22845: emp24/gp25L/p24 protein-related (HF=3e-2)
Module size	17 genes
NF	0.47
%ile	58.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.89	ZmAffx.1078.1.S1_at	AI948227	-	-	3e-2	At3g22845	emp24/gp25L/p24 protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	ZmAffx.172.1.A1_at	AI668238	-	-	3e+0	Atmg00240	-	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.95	Zm.4185.1.A1_at	AI622761	hypothetical protein LOC100274506	-	9e-8	At1g24360	3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.96	Zm.16475.3.A1_at	BQ704114	-	-	2e-7	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.95	Zm.12480.1.A1_at	AI901944	hypothetical protein LOC100194202	-	4e-1	At4g15393	CYP702A5	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.15671.1.A1_at	AI622439	-	-	4e-1	At5g20630	GER3 (GERMIN 3)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.13916.1.S1_at	AF037027.1	peroxidase R15	-	6e-7	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	ZmAffx.1360.1.S1_at	40794996-48	-	-	1e+0	At5g44650	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	ZmAffx.147.1.S1_at	AI667831	Hypothetical protein LOC100192026	-	3e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	Zm.8795.1.A1_a_at	BM337357	-	-	5e+0	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.6866.1.S1_at	CO526072	nucleic acid binding protein	-	2e-1	At4g17720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.4250.1.A1_at	T18710	autophagy-related 3	-	8e-13	At5g61500	ATG3	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.11672.1.A1_at	BM379851	-	-	5e+0	At5g36910	THI2.2 (THIONIN 2.2)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.16932.1.A1_s_at	AI737420	hypothetical protein LOC100191547	-	5e+0	At4g26410	-	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.18134.1.A1_at	CN844971	-	-	2e-1	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.98	Zm.94.1.S1_at	X79934.1	Dof2	-	1e-7	At2g28810	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.98	Zm.5890.1.A1_at	AI664901	-	-	3e+0	At1g24010	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.3	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.2	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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