Co-expression analysis

Gene ID	ZmAffx.1074.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g42210: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (HF=1e+1)
Module size	6 genes
NF	0.66
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.97	ZmAffx.1074.1.S1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.98	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.2	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the wheat gene, Ta.11568.1.A1_at, orthologous to the query gene, ZmAffx.1074.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.98	99.9	Ta.11568.1.A1_at	At2g42210	-	-	3e+0	Atmg01330	-	O.I.	H.G.	S.X.	Please select
0.54	75.5	TaAffx.81536.2.S1_s_at	At2g42210	-	-	2e-1	At4g17040	ATP-dependent Clp protease proteolytic subunit, putative	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.4063.3.S1_at	At2g42210	-	-	8e-1	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.53	74.9	TaAffx.115939.2.S1_at	At2g42210	-	-	7e-2	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.7193.3.S1_at	At2g42210	-	-	1e+1	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.25008.1.S1_at	At2g42210	-	-	1e+1	At5g24370	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.13083.1.S1_at	At2g42210	-	-	3e-1	At4g12040	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.4898.1.S1_at	At2g42210	-	-	4e+0	At2g01530	MLP329 (MLP-LIKE PROTEIN 329)	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.79437.1.S1_at	At2g42210	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.51993.1.S1_at	At2g42210	-	-	1e+1	At4g08360	KOW domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.4857.1.S1_at	At2g42210	-	-	4e+0	At1g77682	-	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.73323.1.S1_at	At2g42210	-	-	3e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.3911.2.S1_s_at	At2g42210	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.118620.1.S1_at	At2g42210	-	-	1e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.85817.1.S1_at	At2g42210	-	-	4e+0	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.57312.1.S1_at	At2g42210	-	-	7e-2	At5g37550	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.3664.1.S1_at	At2g42210	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.98992.1.A1_at	At2g42210	-	-	8e-2	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.21785.1.S1_at	At2g42210	-	-	8e+0	At3g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.112158.1.S1_at	At2g42210	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.55653.1.S1_at	At2g42210	-	-	1e+1	At4g20030	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.17343.1.S1_at	At2g42210	-	-	1e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.112465.1.S1_s_at	At2g42210	-	-	3e-13	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.119476.1.S1_at	At2g42210	-	-	1e+0	At1g07240	UGT71C5 (UDP-GLUCOSYL TRANSFERASE 71C5)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.119496.1.S1_at	At2g42210	-	-	9e-1	At5g40490	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.30411.1.S1_at	At2g42210	-	-	5e+0	At5g62280	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.29331.1.S1_at	At2g42210	FD-like 6 protein	-	3e-16	At2g41070	EEL (ENHANCED EM LEVEL)	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.50210.1.S1_at	At2g42210	-	-	7e-2	At1g60880	AGL56	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.51594.1.S1_at	At2g42210	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.5596.1.S1_at	At2g42210	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.12864.1.S1_at	At2g42210	-	-	2e+1	At5g03500	transcription coactivator	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.3501.3.A1_at	At2g42210	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.6762.3.S1_at	At2g42210	-	-	1e+0	At5g61490	-	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.17601.1.S1_at	At2g42210	-	-	4e+0	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.83097.1.S1_at	At2g42210	-	-	7e-2	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.51397.1.S1_at	At2g42210	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.105451.1.S1_at	At2g42210	-	-	1e+0	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.85651.1.S1_at	At2g42210	-	-	1e+1	At5g61430	ANAC100 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 100)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.78517.1.S1_at	At2g42210	-	-	4e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.31313.1.S1_at	At2g42210	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.55930.1.S1_at	At2g42210	-	-	6e+0	At5g63240	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.11787.1.A1_at	At2g42210	-	-	4e+0	At4g35980	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.21983.1.S1_at	At2g42210	-	-	4e-1	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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