CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.1074.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g42210: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (HF=1e+1)

Module size 6 genes

NF 0.66

%ile 88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 74.4 0.97 ZmAffx.1074.1.S1_at AI947680 - - 1e+1 At2g42210 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein O.I. H.G. S.X.
0.91 99.0 0.98 Zm.12132.3.S1_a_at AI461523 hypothetical protein LOC100192680 - 4e-50 At5g03240 UBQ3 (POLYUBIQUITIN 3) O.I. H.G. S.X.
0.73 89.9 0.98 Zm.4099.2.A1_s_at AI770849 hypothetical protein LOC100191159 - 8e-1 At2g38870 protease inhibitor, putative O.I. H.G. S.X.
0.67 85.8 0.98 Zm.18903.1.A1_at CO530915 - - 7e-2 At5g07400 forkhead-associated domain-containing protein / FHA domain-containing protein O.I. H.G. S.X.
0.53 69.1 0.98 Zm.6418.1.S1_at AY108322.1 hypothetical protein LOC100216693 - 2e-1 At3g44580 unknown protein O.I. H.G. S.X.
0.48 61.3 0.98 ZmAffx.1097.1.S1_at AW120085 - - 1e+1 At5g25770 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.2 99.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8 98.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the rice gene, Os03g0668500, orthologous to the query gene, ZmAffx.1074.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.52 69.6 Os03g0668500 At2g42210 - Hypothetical protein 5e+0 At5g25160 ZFP3 (ZINC FINGER PROTEIN 3) O.I. H.G. S.X.
0.36 44.0 Os02g0110600 At2g42210 - Conserved hypothetical protein 6e-5 At5g61350 protein kinase family protein O.I. H.G. S.X.
0.35 41.7 Os01g0388000 At2g42210 - Cytochrome P450 family protein 5e-1 At5g15460 MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2) O.I. H.G. S.X.
0.33 38.8 Os01g0230200 At2g42210 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 3e-10 At2g20100 ethylene-responsive family protein O.I. H.G. S.X.
0.32 36.3 Os05g0328000 At2g42210 - Hypothetical protein 3e-1 At3g28500 60S acidic ribosomal protein P2 (RPP2C) O.I. H.G. S.X.
0.29 31.1 Os04g0496800 At2g42210 - Calcium-binding EF-hand domain containing protein 2e-1 At5g39720 AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN) O.I. H.G. S.X.
0.23 21.2 Os10g0539400 At2g42210 - Conserved hypothetical protein 4e+0 At3g55646 unknown protein O.I. H.G. S.X.
0.22 19.4 Os09g0549500 At2g42210 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 4e-1 At4g31330 unknown protein O.I. H.G. S.X.
0.19 15.1 Os01g0302800 At2g42210 - Hypothetical protein 6e+0 At5g17360 - O.I. H.G. S.X.
0.17 12.6 Os04g0655400 At2g42210 - Protein kinase domain containing protein 2e+0 At5g46730 glycine-rich protein O.I. H.G. S.X.
0.17 12.6 Os02g0180400 At2g42210 - - 4e-2 At1g06475 unknown protein O.I. H.G. S.X.
0.15 10.3 Os05g0221200 At2g42210 - Protein of unknown function DUF538 family protein 7e-13 At5g11500 unknown protein O.I. H.G. S.X.
0.09 4.9 Os01g0311400 At2g42210 - Zn-finger, RING domain containing protein 5e+0 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.08 4.2 Os07g0498400 At2g42210 - Protein kinase domain containing protein 5e-10 At4g20140 GSO1 (GASSHO1) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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