Co-expression analysis

Gene ID	ZmAffx.1074.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g42210: mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (HF=1e+1)
Module size	6 genes
NF	0.66
%ile	88.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.97	ZmAffx.1074.1.S1_at	AI947680	-	-	1e+1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.98	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.2	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C291000002_at, orthologous to the query gene, ZmAffx.1074.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	65.5	PsAffx.C291000002_at	At2g42210	-	-	4e+0	At5g26840	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	HgAffx.14960.1.S1_at	At2g42210	-	-	3e-3	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.C38000019_at	At2g42210	-	-	2e-1	At2g02061	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.C15000001_s_at	At2g42210	-	-	2e+0	At2g01670	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.C11000111_at	At2g42210	-	-	6e-3	At4g39160	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.C99000057_at	At2g42210	-	-	2e+0	At5g04490	VTE5 (vitamin E pathway gene5)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage