Co-expression analysis

Gene ID	ZmAffx.106.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g14060: major latex protein-related / MLP-related (HF=3e+0)
Module size	32 genes
NF	0.34
%ile	33.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.95	ZmAffx.106.1.A1_at	AI665540	-	-	3e+0	At4g14060	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.19237.1.A1_at	CA402877	hypothetical protein LOC100216898	-	2e-1	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.96	Zm.18122.1.S1_at	CN844577	hypothetical protein LOC100278956	-	5e+0	At5g44540	tapetum-specific protein-related	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.45.1.A1_at	D14576.1	glutamine synthetase5	-	2e-51	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.2355.1.A1_at	CF043465	-	-	9e+0	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.10423.1.S1_at	CN844467	fatty acid desaturase8	-	6e-14	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.5277.1.A1_at	AI619073	-	-	1e+0	At4g39750	F-box family protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.6439.2.A1_at	AI881500	eucaryotic initiation factor7	-	7e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.522.1.S1_at	AF200531.1	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.2699.1.A1_at	AW066891	hypothetical protein LOC100193918	-	1e+1	At5g16170	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.17915.1.A1_at	CF038577	-	-	7e-103	Atmg00830	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.17620.1.S1_at	CK368321	-	-	4e+0	At5g59860	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.18338.1.A1_at	BM074037	hypothetical protein LOC100193344	-	4e+0	At2g27410	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.18474.1.A1_at	CO531196	hypothetical protein LOC100192651	-	6e+0	At5g61997	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.2713.2.S1_a_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.16630.1.A1_at	CF646437	-	-	1e+1	At5g60580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.4340.1.A1_at	M76685.1	orange pericarp2	-	2e-29	At4g27070	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.2308.1.A1_at	BG841336	hypothetical protein LOC100276079	-	2e-2	At5g66005	Expressed protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.2678.1.A1_at	BM339111	hypothetical protein LOC100193236	-	2e-1	At1g05180	AXR1 (AUXIN RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.19138.1.S1_at	CO525589	hypothetical protein LOC100277966	-	5e-1	At2g46300	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.9194.1.A1_at	BM267243	-	-	1e+0	At3g03456	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.16824.1.S1_a_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.10123.1.S1_at	BM380717	heat- and acid-stable phosphoprotein	-	3e-14	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.4549.1.A1_at	CK144436	hypothetical protein LOC100272569	-	1e-6	At5g55530	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.9386.1.A1_at	BQ539064	hypothetical protein LOC100275351	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.5681.1.A1_at	BM381270	acylamino-acid-releasing enzyme	-	6e+0	At4g18692	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.3735.1.A1_at	AY107167.1	hypothetical protein LOC100277155	-	5e-8	At4g39860	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.97	Zm.5691.1.A1_at	AW065747	-	-	7e-4	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.97	Zm.2823.1.A1_at	BI097694	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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