Co-expression analysis

Gene ID ZmAffx.1053.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g16240: SYP51 (SYNTAXIN OF PLANTS 51) (HF=3e+0)
Module size 6 genes
NF 0.26
%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5571.60.95ZmAffx.1053.1.A1_atAI881846--3e+0At1g16240SYP51 (SYNTAXIN OF PLANTS 51)O.I.H.G.S.X.
0.5976.10.95Zm.5132.1.A1_atAY105555.1calcium lipid binding protein-like-7e-1At1g15320unknown proteinO.I.H.G.S.X.
0.5065.70.94Zm.4359.2.A1_atAI795776EMB2756-2e+0At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4455.70.96Zm.144.2.A1_atBE123186Metallothionein2-1e+1At3g58370K-Cl Co-transporter type 1 protein-related / KCC1 protein-relatedO.I.H.G.S.X.
0.3131.60.95Zm.19103.1.S1_atCF625279hypothetical protein LOC100193224-3e+0At4g09490RNase H domain-containing proteinO.I.H.G.S.X.
0.094.00.94Zm.16394.1.S1_atCF272871--1e-1At2g03470myb family transcription factor / ELM2 domain-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.94Zm.13528.1.A1_atCO529656hypothetical protein LOC100216925-4e-1At2g18860syntaxin family proteinO.I.H.G.S.X.
0.5065.70.94Zm.6023.1.S1_atAY059648.1alternative oxidase AOX3 precursor-1e-5At1g32350AOX1D (alternative oxidase 1D)O.I.H.G.S.X.
0.4861.30.91Zm.8468.1.A1_atBM074266gibberellin receptor GID1L2-6e+0At3g45480zinc ion bindingO.I.H.G.S.X.
0.4048.50.94Zm.11291.2.S1_x_atCA401976--9e-3At1g48130ATPER1O.I.H.G.S.X.
0.3945.60.92Zm.8142.1.A1_atBM080424hypothetical protein LOC100275043-4e-4At1g05420OFP12 (OVATE FAMILY PROTEIN 12)O.I.H.G.S.X.
0.3336.00.93Zm.8233.2.S1_a_atBM381462splicing factor, arginine/serine-rich 7-2e-3At4g31580SRZ-22O.I.H.G.S.X.
0.3131.60.95Zm.1546.1.A1_atBM348327hypothetical protein LOC100273379-6e-22At3g20390endoribonuclease L-PSP family proteinO.I.H.G.S.X.
0.3029.80.90Zm.11756.1.A1_x_atBM380495Alpha expansin2-3e+0At1g35537-O.I.H.G.S.X.
0.3029.80.91Zm.10200.1.A1_atBM379455hypothetical protein LOC100274487-4e-6At4g30020subtilase family proteinO.I.H.G.S.X.
0.2828.10.94Zm.19054.1.A1_atCO534445bile acid sodium symporter/ transporter-3e+0At5g03660unknown proteinO.I.H.G.S.X.
0.2521.30.93Zm.8677.1.A1_atCO531412structural constituent of ribosome-2e-1At3g26147unknown proteinO.I.H.G.S.X.
0.2521.30.94Zm.3454.1.S1_atAW282335sex determination protein tasselseed-2-3e+0At2g27130protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2521.30.94Zm.6159.2.A1_x_atBE510560--1e-20At2g34160nucleic acid bindingO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.698.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage