Co-expression analysis

Gene ID	ZmAffx.1053.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g16240: SYP51 (SYNTAXIN OF PLANTS 51) (HF=3e+0)
Module size	6 genes
NF	0.26
%ile	21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.95	ZmAffx.1053.1.A1_at	AI881846	-	-	3e+0	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.95	Zm.5132.1.A1_at	AY105555.1	calcium lipid binding protein-like	-	7e-1	At1g15320	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.4359.2.A1_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.144.2.A1_at	BE123186	Metallothionein2	-	1e+1	At3g58370	K-Cl Co-transporter type 1 protein-related / KCC1 protein-related	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.95	Zm.19103.1.S1_at	CF625279	hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.94	Zm.16394.1.S1_at	CF272871	-	-	1e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.6	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1622458_at, orthologous to the query gene, ZmAffx.1053.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1622458_at	At1g16240	-	-	1e+0	At1g51570	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1609980_a_at	At1g16240	spermine synthase	-	4e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	O.I.	H.G.	S.X.	Please select
0.38	53.6	1618637_at	At1g16240	hypothetical protein LOC100264197	-	1e+0	At1g51570	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1611177_at	At1g16240	hypothetical protein LOC100263874	-	2e-8	At1g60200	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.03	4.2	1617445_s_at	At1g16240	similar to Hsp70 interacting protein/thioredoxin chimera	-	1e+0	At1g31020	ATO2 (Arabidopsis thioredoxin o2)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1617532_at	At1g16240	hypothetical protein LOC100256945	-	3e-10	At1g02080	transcriptional regulator-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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