CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.1053.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g16240: SYP51 (SYNTAXIN OF PLANTS 51) (HF=3e+0)

Module size 6 genes

NF 0.26

%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 71.6 0.95 ZmAffx.1053.1.A1_at AI881846 - - 3e+0 At1g16240 SYP51 (SYNTAXIN OF PLANTS 51) O.I. H.G. S.X.
0.59 76.1 0.95 Zm.5132.1.A1_at AY105555.1 calcium lipid binding protein-like - 7e-1 At1g15320 unknown protein O.I. H.G. S.X.
0.50 65.7 0.94 Zm.4359.2.A1_at AI795776 EMB2756 - 2e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.44 55.7 0.96 Zm.144.2.A1_at BE123186 Metallothionein2 - 1e+1 At3g58370 K-Cl Co-transporter type 1 protein-related / KCC1 protein-related O.I. H.G. S.X.
0.31 31.6 0.95 Zm.19103.1.S1_at CF625279 hypothetical protein LOC100193224 - 3e+0 At4g09490 RNase H domain-containing protein O.I. H.G. S.X.
0.09 4.0 0.94 Zm.16394.1.S1_at CF272871 - - 1e-1 At2g03470 myb family transcription factor / ELM2 domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.6 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os07g0592600, orthologous to the query gene, ZmAffx.1053.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 Os07g0592600 At1g16240 - GH3 homolog (Fragment) 3e-16 At2g14960 GH3.1 O.I. H.G. S.X.
0.46 60.9 Os03g0336700 At1g16240 - PAP/25A core domain containing protein 1e-4 At3g51620 - O.I. H.G. S.X.
0.44 58.1 Os04g0661200 At1g16240 - Protein of unknown function DUF941 family protein 1e-2 At4g26310 elongation factor P (EF-P) family protein O.I. H.G. S.X.
0.37 45.0 Os05g0500900 At1g16240 - Auxin-responsive-like protein (Auxin-responsiveGH3 homologue) 2e-5 At5g54510 DFL1 (DWARF IN LIGHT 1) O.I. H.G. S.X.
0.32 36.3 Os02g0819400 At1g16240 - Globin-like family protein 2e-15 At5g60760 2-phosphoglycerate kinase-related O.I. H.G. S.X.
0.30 32.7 Os03g0826500 At1g16240 - Anthranilate synthase alpha 1 subunit 5e-9 At5g05730 ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1) O.I. H.G. S.X.
0.29 31.1 Os06g0283400 At1g16240 - Phosphatidylinositol 3- and 4-kinase domaincontaining protein 1e-16 At2g03890 phosphatidylinositol 3- and 4-kinase family protein O.I. H.G. S.X.
0.26 25.6 Os03g0724500 At1g16240 - Conserved hypothetical protein 1e+0 At3g43950 phosphotransferase, alcohol group as acceptor O.I. H.G. S.X.
0.25 24.1 Os06g0326700 At1g16240 - Diacylglycerol acyltransferase family protein 7e+0 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) O.I. H.G. S.X.
0.25 24.1 Os03g0799600 At1g16240 - ES43 like protein 6e-4 At4g39100 SHL1 (short life) O.I. H.G. S.X.
0.23 21.2 Os06g0147400 At1g16240 - Hypothetical protein 6e+0 At5g18080 auxin-responsive protein, putative O.I. H.G. S.X.
0.19 15.1 Os03g0289100 At1g16240 - OSK3 (OSK5) 1e-52 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) O.I. H.G. S.X.
0.15 10.3 Os05g0513900 At1g16240 - Peptidase S33, proline iminopeptidase 1 familyprotein 1e-14 At2g14260 PIP O.I. H.G. S.X.
0.05 2.5 Os07g0137900 At1g16240 - Ribosomal protein S12/S23 family protein 3e-18 At5g42950 GYF domain-containing protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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