Co-expression analysis

Gene ID ZmAffx.1053.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g16240: SYP51 (SYNTAXIN OF PLANTS 51) (HF=3e+0)
Module size 6 genes
NF 0.26
%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5571.60.95ZmAffx.1053.1.A1_atAI881846--3e+0At1g16240SYP51 (SYNTAXIN OF PLANTS 51)O.I.H.G.S.X.
0.5976.10.95Zm.5132.1.A1_atAY105555.1calcium lipid binding protein-like-7e-1At1g15320unknown proteinO.I.H.G.S.X.
0.5065.70.94Zm.4359.2.A1_atAI795776EMB2756-2e+0At5g52160protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4455.70.96Zm.144.2.A1_atBE123186Metallothionein2-1e+1At3g58370K-Cl Co-transporter type 1 protein-related / KCC1 protein-relatedO.I.H.G.S.X.
0.3131.60.95Zm.19103.1.S1_atCF625279hypothetical protein LOC100193224-3e+0At4g09490RNase H domain-containing proteinO.I.H.G.S.X.
0.094.00.94Zm.16394.1.S1_atCF272871--1e-1At2g03470myb family transcription factor / ELM2 domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.698.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.298.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig14245_at, orthologous to the query gene, ZmAffx.1053.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6784.7Contig14245_atAt1g16240--4e-1At5g25190ethylene-responsive element-binding protein, putativeO.I.H.G.S.X.
0.3240.3HV05A08u_x_atAt1g16240UDP-D-glucuronate decarboxylase-2e+1At5g44560VPS2.2O.I.H.G.S.X.
0.3138.6Contig12685_atAt1g16240--6e+0At4g29160SNF7.1O.I.H.G.S.X.
0.3138.6Contig12995_atAt1g16240--2e+0At4g12230esterase/lipase/thioesterase family proteinO.I.H.G.S.X.
0.2935.5rbags1n23_s_atAt1g16240--3e+0At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.2630.4Contig20627_atAt1g16240--1e-1At5g20950glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.2630.4Contig10175_atAt1g16240--1e-7At5g23550-O.I.H.G.S.X.
0.2630.4Contig13285_atAt1g16240--1e-8At5g15740unknown proteinO.I.H.G.S.X.
0.1919.6Contig1048_atAt1g16240--2e-130At4g02890UBQ14O.I.H.G.S.X.
0.1716.9Contig3650_atAt1g16240--3e+0At1g44835YbaK/prolyl-tRNA synthetase family proteinO.I.H.G.S.X.
0.1615.3Contig15862_s_atAt1g16240--7e-1At1g69580transcription factorO.I.H.G.S.X.
0.1311.6Contig13552_atAt1g16240--7e-3At1g15510pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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