CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID ZmAffx.1053.1.A1_at

Gene name
Homology with Arabidopsis Similar to At1g16240: SYP51 (SYNTAXIN OF PLANTS 51) (HF=3e+0)

Module size 6 genes

NF 0.26

%ile 21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 71.6 0.95 ZmAffx.1053.1.A1_at AI881846 - - 3e+0 At1g16240 SYP51 (SYNTAXIN OF PLANTS 51) O.I. H.G. S.X.
0.59 76.1 0.95 Zm.5132.1.A1_at AY105555.1 calcium lipid binding protein-like - 7e-1 At1g15320 unknown protein O.I. H.G. S.X.
0.50 65.7 0.94 Zm.4359.2.A1_at AI795776 EMB2756 - 2e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.44 55.7 0.96 Zm.144.2.A1_at BE123186 Metallothionein2 - 1e+1 At3g58370 K-Cl Co-transporter type 1 protein-related / KCC1 protein-related O.I. H.G. S.X.
0.31 31.6 0.95 Zm.19103.1.S1_at CF625279 hypothetical protein LOC100193224 - 3e+0 At4g09490 RNase H domain-containing protein O.I. H.G. S.X.
0.09 4.0 0.94 Zm.16394.1.S1_at CF272871 - - 1e-1 At2g03470 myb family transcription factor / ELM2 domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.6 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g16240, orthologous to the query gene, ZmAffx.1053.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.89 94.6 At1g16240 838193 SYP51 (SYNTAXIN OF PLANTS 51) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. O.I. H.G. S.X.
0.50 65.3 At3g11530 820326 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;FMPO O.I. H.G. S.X.
0.40 50.8 At2g45980 819206 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.38 46.7 At3g55770 824743 LIM domain-containing protein F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF O.I. H.G. S.X.
0.33 38.1 At4g22750 828372 zinc finger (DHHC type) family protein F:zinc ion binding;P:unknown;C:endomembrane system;MOFP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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