Co-expression analysis

Gene ID	ZmAffx.1044.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g66800: unknown protein (HF=3e-1)
Module size	33 genes
NF	0.39
%ile	43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.9	0.96	ZmAffx.1044.1.A1_at	AI881789	-	-	3e-1	At5g66800	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.10438.1.S1_at	CA826544	-	-	1e+1	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.9948.1.A1_at	CB350788	3-N-debenzoyl-2-deoxytaxol N-benzoyltransferase	-	2e+0	At1g54575	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	ZmAffx.971.1.S1_at	AI833875	-	-	3e+0	At3g05170	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.15967.1.S1_at	CA404149	-	-	2e-4	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	ZmAffx.960.1.S1_at	AI833639	-	-	3e+0	At2g19640	ASHR2 (ASH1-RELATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.18245.1.S1_at	AI665288	-	-	2e+0	At5g18130	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.13662.1.A1_at	AY107114.1	-	-	4e+0	At2g40740	WRKY55	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.4716.1.A1_at	AI738149	hypothetical protein LOC100193057	-	1e-1	At4g37750	ANT (AINTEGUMENTA)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.11590.1.A1_at	BM379183	leucoanthocyanidin dioxygenase	-	5e-3	At5g20400	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.19275.1.A1_at	BM080650	hypothetical protein LOC100191349	-	3e-1	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	ZmAffx.962.1.A1_at	AI833777	hypothetical protein LOC100275523	-	3e-22	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.15979.1.A1_at	AW091403	hypothetical protein LOC100277589	-	8e-2	At3g10750	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.7791.1.A1_at	BM382756	hypothetical protein LOC100191966	-	3e-8	At4g15960	catalytic/ epoxide hydrolase	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.17950.1.A1_at	CK827767	-	-	3e-1	At2g03310	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.93.1.A1_at	BM331772	TATA-binding protein1	-	6e-63	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.12454.1.A1_at	CF629114	hypothetical protein LOC100273736	-	6e-3	At1g10640	polygalacturonase	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.5578.4.S1_at	AI677290	Hypothetical protein LOC100193656	-	4e+0	At1g34910	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.1459.1.S1_at	CK368035	cold acclimation protein COR413-PM1	-	2e-1	At4g37220	stress-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.99	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	ZmAffx.1118.1.A1_at	AW355922	-	-	3e+0	At5g66330	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	Zm.10517.1.S1_at	CO533971	hypothetical protein LOC100272293	-	3e-16	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	ZmAffx.1198.1.A1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	ZmAffx.1014.1.S1_at	AI881465	-	-	2e-1	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.17716.1.A1_a_at	CK370089	-	-	4e+0	At4g05010	F-box family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	ZmAffx.556.1.A1_at	AI714513	-	-	1e+1	At4g23900	nucleoside diphosphate kinase 4 (NDK4)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	ZmAffx.827.1.S1_at	AI770520	Growth-regulating factor 8-like	-	3e+0	At3g21610	-	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.98	Zm.9059.1.A1_at	BM341108	-	-	1e+0	At1g02840	SR1	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	ZmAffx.1031.1.S1_at	AI881675	-	-	2e-1	At2g24490	RPA2 (REPLICON PROTEIN A2)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.17089.1.A1_at	BM350286	hypothetical protein LOC100275932	-	3e-1	At1g62850	-	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.98	ZmAffx.912.1.A1_at	AI770956	-	-	5e-2	At4g01580	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.98	Zm.8255.1.A1_at	BM073418	hypothetical protein LOC100277720	-	4e-1	At3g55790	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.4	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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