Co-expression analysis

Gene ID	ZmAffx.1039.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g43240: nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter (HF=3e+0)
Module size	36 genes
NF	0.46
%ile	55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	96.7	0.97	ZmAffx.1039.1.A1_at	AI881774	-	-	3e+0	At2g43240	nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	ZmAffx.1283.1.S1_at	40794996-131	-	-	9e-1	At1g32470	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.4510.3.S1_at	AI734509	hypothetical protein LOC100193304	-	2e-1	At5g24879	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.18971.1.A1_at	CO534149	-	-	3e-8	At2g25870	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	ZmAffx.954.1.S1_at	AI833471	-	-	3e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.15979.1.A1_at	AW091403	hypothetical protein LOC100277589	-	8e-2	At3g10750	-	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.18245.1.S1_at	AI665288	-	-	2e+0	At5g18130	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.7791.1.A1_at	BM382756	hypothetical protein LOC100191966	-	3e-8	At4g15960	catalytic/ epoxide hydrolase	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.12462.1.A1_at	AW066887	hypothetical protein LOC100277431	-	8e-1	At5g45630	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.3124.1.S1_at	AY109771.1	CONSTANS interacting protein 4	-	1e+1	At5g37770	TCH2 (TOUCH 2)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.99	Zm.1690.1.A1_at	CK347441	density-regulated protein	-	4e-17	At5g11900	eukaryotic translation initiation factor SUI1 family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	ZmAffx.1075.1.A1_at	AI947879	-	-	1e+1	At5g10130	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	Zm.13662.1.A1_at	AY107114.1	-	-	4e+0	At2g40740	WRKY55	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	Zm.6767.1.S1_at	AY104126.1	hypothetical protein LOC100216595	-	3e-28	At1g52930	brix domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.99	ZmAffx.902.1.A1_at	AI770904	Hypothetical protein LOC100191467	-	3e+0	At4g16640	matrix metalloproteinase, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	Zm.6214.1.A1_a_at	BQ538548	hypothetical protein LOC100273730 /// ORMDL family protein	-	9e-12	At5g42000	ORMDL family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	ZmAffx.962.1.A1_at	AI833777	hypothetical protein LOC100275523	-	3e-22	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.99	Zm.10517.1.S1_at	CO533971	hypothetical protein LOC100272293	-	3e-16	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.12454.1.A1_at	CF629114	hypothetical protein LOC100273736	-	6e-3	At1g10640	polygalacturonase	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.99	Zm.13979.1.S1_at	AY106073.1	hypothetical protein LOC100273275	-	8e-22	At2g20130	LCV1 (LIKE COV 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.9059.1.A1_at	BM341108	-	-	1e+0	At1g02840	SR1	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.12526.1.A1_x_at	AI734393	-	-	3e+0	At1g58150	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.99	Zm.16469.1.S1_at	CF650934	-	-	3e-4	At3g15352	ATCOX17	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.388.1.A1_at	AF047852.1	terminal ear1	-	3e-7	At3g26120	TEL1 (TERMINAL EAR1-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	ZmAffx.848.1.A1_at	AI770631	-	-	8e-1	At1g22720	wall-associated kinase, putative	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	ZmAffx.556.1.A1_at	AI714513	-	-	1e+1	At4g23900	nucleoside diphosphate kinase 4 (NDK4)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	ZmAffx.1198.1.A1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.99	ZmAffx.1429.1.S1_at	11990232-14	-	-	0	Atcg00170	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.16261.1.A1_at	CA400028	-	-	2e-3	At1g79920	ATP binding	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	ZmAffx.92.1.S1_at	AI665387	-	-	2e-1	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.8805.1.A1_at	BM337840	-	-	6e+0	At5g16200	50S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.98	Zm.10558.1.A1_at	BM378271	-	-	3e-4	At3g46600	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.10522.2.A1_at	BQ538089	ataxin-3	-	3e-1	At3g06610	DNA-binding enhancer protein-related	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.99	ZmAffx.908.1.S1_at	AI770943	hypothetical protein LOC100279225	-	8e-1	At5g41720	-	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.99	Zm.18515.1.A1_at	CF629792	hypothetical protein LOC100191462	-	1e+0	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.98	Zm.3594.1.A1_at	BG873936	-	-	1e+0	At1g79180	MYB63 (MYB DOMAIN PROTEIN 63)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.6	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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