Co-expression analysis

Gene ID	ZmAffx.1019.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g29070: ubiquitin fusion degradation UFD1 family protein (HF=3e+0)
Module size	6 genes
NF	0.73
%ile	94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	ZmAffx.1019.1.S1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	1.00	Zm.6944.4.A1_a_at	AW498023	actin-1	-	4e-31	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.17637.1.S1_at	CK368490	-	-	5e+0	At2g22450	riboflavin biosynthesis protein, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.14270.1.A1_a_at	AY105925.1	hypothetical protein LOC100216603	-	2e+0	At3g56510	TBP-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.99	Zm.14014.1.A1_at	CF050089	NADH-ubiquinone oxidoreductase 23 kDa subunit	-	2e-62	At1g79010	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	ZmAffx.597.1.A1_at	AI715025	-	-	8e-1	At1g43260	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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