Co-expression analysis

Gene ID	ZmAffx.1018.1.S1_at
Gene name	hypothetical protein LOC100279255
Homology with Arabidopsis	Similar to At1g58420: - (HF=5e-2)
Module size	16 genes
NF	0.35
%ile	36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	0.93	ZmAffx.1018.1.S1_at	AI881527	hypothetical protein LOC100279255	-	5e-2	At1g58420	-	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.95	Zm.9217.2.S1_at	AI665633	-	-	2e-1	At4g22850	-	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.96	Zm.5908.1.A1_at	AW424447	hypothetical protein LOC100273971	-	2e-2	At1g11890	SEC22	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.17374.2.A1_a_at	CF637833	-	-	1e+0	At3g43490	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.5003.2.A1_x_at	CO518270	-	-	9e-2	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.5851.6.A1_a_at	L46399.1	MADS box protein	-	2e-8	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.17295.1.A1_at	CK347563	-	-	2e+0	At2g18050	HIS1-3 (HISTONE H1-3)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.6142.1.A1_at	AY105151.1	annexin p33	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.5086.1.A1_a_at	CF625592	hypothetical protein LOC100277068	-	1e+0	At5g08391	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.95	Zm.5565.1.S1_at	D45402.1	cysteine protease1	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.96	Zm.15085.1.A1_at	AI065806	-	-	4e-11	At4g14070	AAE15 (acyl-activating enzyme 15)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.2057.1.S1_at	AY029557.1	DNA methyltransferase ZMET4	-	5e-8	At5g25480	DNMT2 (DNA METHYLTRANSFERASE-2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.17741.1.S1_at	CK370742	-	-	4e+0	At5g21430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.1943.1.A1_at	BM080868	-	-	6e+0	At3g28440	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.17516.1.S1_at	CF623514	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.17839.1.S1_at	U12679.1	glutathione S-transferase2	-	1e-1	At4g02520	ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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