Co-expression analysis

Gene ID	ZmAffx.1016.1.A1_at
Gene name	Hypothetical protein LOC100194117
Homology with Arabidopsis	Similar to At4g19985: GCN5-related N-acetyltransferase (GNAT) family protein (HF=1e-2)
Module size	26 genes
NF	0.53
%ile	68.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.98	ZmAffx.1016.1.A1_at	AI881482	Hypothetical protein LOC100194117	-	1e-2	At4g19985	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.17179.1.A1_at	CK368850	-	-	9e-14	At1g27740	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.98	Zm.4553.1.S1_at	BE238641	-	-	4e-1	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.98	Zm.10449.1.S1_at	BQ528465	hypothetical protein LOC100274604	-	5e-4	At4g17670	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.98	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.791.1.S1_s_at	AY111675.1	hypothetical protein LOC100280140	-	3e+0	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.15421.1.S1_at	AY107122.1	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.98	Zm.12678.2.S1_at	CN844593	-	-	8e-11	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.97	Zm.17849.1.A1_at	AY110409.1	Hypothetical protein LOC100192672	-	1e-71	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.58	75.1	0.98	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.3996.1.S1_at	CD436900	hypothetical protein LOC100274383	-	2e-11	At2g39770	CYT1 (CYTOKINESIS DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.18083.1.A1_a_at	BU079763	-	-	1e-17	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.11598.1.A1_at	BM379212	-	-	1e+0	At5g11990	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.2823.1.A1_at	BI097694	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.10112.1.A1_at	BM268000	-	-	1e+0	At5g23810	AAP7	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.12369.1.S1_at	AY107124.1	-	-	2e+1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.7770.1.A1_at	CF632652	hypothetical protein LOC100274956	-	7e-1	At1g53935	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.98	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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