Co-expression analysis

Gene ID Zm.9984.1.A1_at
Gene name Hypothetical protein LOC100217031
Homology with ArabidopsisSimilar to At1g65000: unknown protein (HF=4e-4)
Module size 6 genes
NF 0.70
%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.98Zm.9984.1.A1_atCO529085Hypothetical protein LOC100217031-4e-4At1g65000unknown proteinO.I.H.G.S.X.
0.8395.60.98Zm.4385.1.S1_atBQ487047small nuclear ribonucleoprotein-associated protein B-3e-15At5g44500small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putativeO.I.H.G.S.X.
0.7389.90.98Zm.4132.1.A1_atCO529833hypothetical protein LOC100276765-4e-14At1g16520unknown proteinO.I.H.G.S.X.
0.7389.90.98Zm.11605.1.A1_atBM379262--4e+0At4g11930unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.8233.1.A1_atAI947630--1e-2At4g31580SRZ-22O.I.H.G.S.X.
0.5065.70.99Zm.3633.2.S1_x_atCF634876APx1 - Cytosolic Ascorbate Peroxidase-3e-28At1g07890APX1 (ascorbate peroxidase 1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.60.98Zm.4755.1.A1_atAW091219--8e-9At5g14040mitochondrial phosphate transporterO.I.H.G.S.X.
0.6785.80.98Zm.3699.5.A1_atAY107222.1--3e-2At5g09995unknown proteinO.I.H.G.S.X.
0.6077.80.98Zm.16017.1.A1_atCF244045--2e-4At5g08415lipoic acid synthase family proteinO.I.H.G.S.X.
0.5571.60.97ZmAffx.779.1.A1_s_atAI746265--5e-33Atcg00780-O.I.H.G.S.X.
0.5571.60.97ZmAffx.73.1.S1_atAI665183Hypothetical protein LOC100191932-1e-5At1g11930alanine racemase family proteinO.I.H.G.S.X.
0.5571.60.97Zm.14076.2.A1_a_atCO526265hypothetical protein LOC100279817-9e-2At5g27450MK (MEVALONATE KINASE)O.I.H.G.S.X.
0.5571.60.97Zm.15154.1.A1_atBM080233--2e-6At2g42380bZIP transcription factor family proteinO.I.H.G.S.X.
0.5369.10.96Zm.201.1.S1_atL16798.1class I acidic chitinase-8e-3At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.5065.70.97Zm.18516.1.A1_atCO526437--2e+0At5g55570unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.4623.1.S1_atAI372203Hypothetical protein LOC100217143-6e-2At1g68020ATTPS6O.I.H.G.S.X.
0.5065.70.98Zm.16892.3.S1_x_atCB281906calmodulin binding protein-5e-3At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
0.5065.70.98Zm.16988.1.A1_atL10634.1beta-7 tubulin-4e-117At5g23860TUB8O.I.H.G.S.X.
0.5065.70.98Zm.2390.1.S1_atCF628678hypothetical protein LOC100276791-1e-1At5g09850transcription elongation factor-relatedO.I.H.G.S.X.
0.5065.70.98Zm.9989.1.A1_atBM332236DNA binding protein-5e+0At5g03090unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.14687.1.S1_s_atCA828256hypothetical protein LOC100272479-3e-1At2g15770glycine-rich proteinO.I.H.G.S.X.
0.4658.40.97Zm.7405.1.A1_atBM078260--3e+0At5g63480unknown proteinO.I.H.G.S.X.
0.4455.70.97ZmAffx.956.1.S1_atAI833508--8e-1At1g08580unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.16178.1.A1_s_atBM347672hypothetical protein LOC100275193 /// hypothetical protein LOC100276703-3e-5At4g39235unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.12037.1.S1_atBI894209bHLH transcription factor PTF1-4e-2At4g30980basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.4352.80.97Zm.4891.1.S1_atBF729097--5e-1At3g14850unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.2903.1.A1_atCF019919hypothetical protein LOC100274564-9e-8At5g62000ARF2 (AUXIN RESPONSE FACTOR 2)O.I.H.G.S.X.
0.4352.80.97Zm.16805.3.S1_atBM381902basic endochitinase C-2e-10At3g12500ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)O.I.H.G.S.X.
0.4352.80.98Zm.4002.1.A1_atCF623938hypothetical LOC542196-5e-28At2g1974060S ribosomal protein L31 (RPL31A)O.I.H.G.S.X.
0.4251.30.96Zm.2888.1.A1_atAY108014.1hypothetical protein LOC100191922-1e-3At2g17370HMG2 (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2)O.I.H.G.S.X.
0.4048.50.97Zm.19125.1.S1_atCF631194hypothetical protein LOC100278829-2e+0At3g21600senescence/dehydration-associated protein-relatedO.I.H.G.S.X.
0.4048.50.98Zm.18051.1.A1_atCF631263--2e+0At3g13674unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.5201.1.S1_atBM080627secondary cell wall-related glycosyltransferase family 47-6e-11At5g61840GUT1O.I.H.G.S.X.
0.4048.50.98Zm.4764.1.S1_atAI739879vacuolar protein sorting 37C-2e-3At2g36680-O.I.H.G.S.X.
0.4048.50.98Zm.13409.1.S1_atAF457934.13-oxoacyl-synthase III-6e-2At1g62640KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)O.I.H.G.S.X.
0.4048.50.98Zm.7069.1.S1_atAF036891.2plastid starch synthase I precursor-3e-4At5g24300SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)O.I.H.G.S.X.
0.3641.30.96Zm.18488.1.A1_atBM269253hypothetical protein LOC100191265-7e+0At3g57540remorin family proteinO.I.H.G.S.X.
0.3641.30.97Zm.4895.1.A1_atAY105014.1hypothetical protein LOC100274005-5e-5At3g59140ATMRP14O.I.H.G.S.X.
0.3641.30.97Zm.2473.1.S1_atAY104610.1clathrin binding protein-8e-1At4g18060clathrin bindingO.I.H.G.S.X.
0.3641.30.97Zm.1773.1.S1_atCO524227hypothetical protein LOC100193052 /// hypothetical protein LOC100273661 /// hypothetical protein LOC100274588-6e-4At5g06370NC domain-containing proteinO.I.H.G.S.X.
0.3641.30.98Zm.17770.1.S1_atCK371626hypothetical protein LOC100274091-4e+0At5g54145unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.18259.1.A1_x_atCN844705B12D protein-2e+1At5g4577560S ribosomal protein L11 (RPL11D)O.I.H.G.S.X.
0.3641.30.98Zm.12236.1.A1_atCA830514hypothetical protein LOC100194199-5e+0At3g13970APG12B (AUTOPHAGY 12 B)O.I.H.G.S.X.
0.3538.90.95Zm.15567.1.S1_atCF632404hypothetical protein LOC100217290-2e-10At3g04500RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3538.90.97Zm.17982.1.A1_atBG840794--2e-1At2g43020ATPAO2 (Polyamine oxidase 2)O.I.H.G.S.X.
0.3336.00.97Zm.19155.2.A1_x_atCO526374--7e-9At4g23650CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)O.I.H.G.S.X.
0.3336.00.97Zm.6475.1.A1_atCK347790hypothetical protein LOC100277255-5e+0At5g57400unknown proteinO.I.H.G.S.X.
0.3336.00.98Zm.4617.1.A1_atAI737356--2e+0At3g54270sucrose-phosphatase 3 (SPP3)O.I.H.G.S.X.
0.3336.00.98Zm.12825.1.S1_atCA402807--4e-2At2g36830GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)O.I.H.G.S.X.
0.3233.40.96Zm.15835.1.A1_atU23188.1Chlorophyll a/b-binding apoprotein CP26 precursor-8e-10At4g10340LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5)O.I.H.G.S.X.
0.3233.40.96Zm.5472.1.A1_atAI622092--1e+0At3g19980ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)O.I.H.G.S.X.
0.3233.40.93Zm.18208.1.A1_s_atBM338077hypothetical protein LOC100275571-4e+0At3g45245-O.I.H.G.S.X.
0.3131.60.96Zm.14302.5.A1_x_atCA403538proteasome subunit alpha type 3-6e-6At2g27020PAG1O.I.H.G.S.X.
0.3131.60.97Zm.13263.1.S1_atAY109418.1nitrite reductase-1e+0At2g15620NIR1 (NITRITE REDUCTASE 1)O.I.H.G.S.X.
0.3131.60.97Zm.13112.2.A1_atAI714527--2e-7At5g63420emb2746 (embryo defective 2746)O.I.H.G.S.X.
0.3131.60.97Zm.18508.1.S1_atCO521114uclacyanin-2-5e-1At1g25300octicosapeptide/Phox/Bem1p (PB1) domain-containing proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.598.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.391.7GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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