CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9984.1.A1_at

Gene name Hypothetical protein LOC100217031
Homology with Arabidopsis Similar to At1g65000: unknown protein (HF=4e-4)

Module size 6 genes

NF 0.70

%ile 91.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 75.1 0.98 Zm.9984.1.A1_at CO529085 Hypothetical protein LOC100217031 - 4e-4 At1g65000 unknown protein O.I. H.G. S.X.
0.83 95.6 0.98 Zm.4385.1.S1_at BQ487047 small nuclear ribonucleoprotein-associated protein B - 3e-15 At5g44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative O.I. H.G. S.X.
0.73 89.9 0.98 Zm.4132.1.A1_at CO529833 hypothetical protein LOC100276765 - 4e-14 At1g16520 unknown protein O.I. H.G. S.X.
0.73 89.9 0.98 Zm.11605.1.A1_at BM379262 - - 4e+0 At4g11930 unknown protein O.I. H.G. S.X.
0.50 65.7 0.98 Zm.8233.1.A1_at AI947630 - - 1e-2 At4g31580 SRZ-22 O.I. H.G. S.X.
0.50 65.7 0.99 Zm.3633.2.S1_x_at CF634876 APx1 - Cytosolic Ascorbate Peroxidase - 3e-28 At1g07890 APX1 (ascorbate peroxidase 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.5 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0 98.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3 91.7 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g65000, orthologous to the query gene, Zm.9984.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.24 20.7 At1g65000 842808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.25 22.6 At1g01725 839271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.25 22.6 At4g04620 825794 ATG8B (autophagy 8b) F:microtubule binding;P:autophagy;C:unknown;MOPFV O.I. H.G. S.X.
0.10 3.4 At1g53030 841736 cytochrome c oxidase copper chaperone family protein encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots. O.I. H.G. S.X.
0.05 1.1 At5g63905 836511 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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