CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9977.1.S1_at

Gene name hypothetical protein LOC100272895
Homology with Arabidopsis Similar to At4g03520: ATHM2 (HF=8e+0)

Module size 6 genes

NF 0.14

%ile 9.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.93 Zm.9977.1.S1_at AY108587.1 hypothetical protein LOC100272895 - 8e+0 At4g03520 ATHM2 O.I. H.G. S.X.
0.27 24.6 0.94 Zm.12374.1.S1_at BQ577812 - - 3e+0 At1g66800 cinnamyl-alcohol dehydrogenase family / CAD family O.I. H.G. S.X.
0.14 7.7 0.95 Zm.2505.1.S1_at BG841722 hypothetical protein LOC100216859 - 4e-5 At1g44970 peroxidase, putative O.I. H.G. S.X.
0.09 4.0 0.96 Zm.7937.1.A1_at BM080506 plant viral-response family protein - 1e+0 At5g19140 AILP1 O.I. H.G. S.X.
0.08 3.4 0.95 Zm.13665.1.S1_at AY107083.1 - - 8e-4 At4g01810 protein transport protein-related O.I. H.G. S.X.
0.08 3.4 0.94 Zm.4273.2.A1_at AI665197 heat shock 70 kDa protein 4 - 3e-10 At1g79920 ATP binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.4 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the grape gene, 1611425_at, orthologous to the query gene, Zm.9977.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 95.1 1611425_at At4g03520 hypothetical protein LOC100252295 - 4e-3 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) O.I. H.G. S.X.
0.46 66.5 1611557_s_at At4g03520 hypothetical protein LOC100267006 - 1e-38 At1g13950 ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) O.I. H.G. S.X.
0.44 64.1 1608734_at At4g03520 hypothetical protein LOC100250206 - 9e-5 At1g70330 ENT1,AT (EQUILIBRATIVE NUCLEOTIDE TRANSPORTER 1) O.I. H.G. S.X.
0.44 64.1 1614177_at At4g03520 hypothetical protein LOC100261330 - 1e+0 At1g72290 trypsin and protease inhibitor family protein / Kunitz family protein O.I. H.G. S.X.
0.43 61.5 1619471_at At4g03520 hypothetical protein LOC100243217 - 1e-112 At3g46060 ATRAB8A O.I. H.G. S.X.
0.40 57.7 1612815_at At4g03520 hypothetical protein LOC100263293 - 4e-17 At5g41910 RNA polymerase II mediator complex protein-related O.I. H.G. S.X.
0.33 45.7 1618475_at At4g03520 hypothetical protein LOC100261048 - 2e-2 At3g15610 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.32 43.1 1609093_at At4g03520 hypothetical protein LOC100245204 - 3e-5 At1g01170 ozone-responsive stress-related protein, putative O.I. H.G. S.X.
0.31 41.3 1622738_at At4g03520 hypothetical protein LOC100243793 - 2e-28 At3g52300 ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) O.I. H.G. S.X.
0.30 39.4 1612152_at At4g03520 - - 4e+0 At3g08490 unknown protein O.I. H.G. S.X.
0.28 37.7 1621462_at At4g03520 hypothetical protein LOC100259318 - 5e-38 At3g22320 NRPB5 O.I. H.G. S.X.
0.27 34.0 1613593_at At4g03520 hypothetical protein LOC100261399 - 9e-34 At5g27470 seryl-tRNA synthetase / serine--tRNA ligase O.I. H.G. S.X.
0.22 25.6 1616748_at At4g03520 hypothetical protein LOC100246856 - 2e-37 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) O.I. H.G. S.X.
0.22 25.6 1607294_at At4g03520 hypothetical protein LOC100246786 - 4e-112 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) O.I. H.G. S.X.
0.21 24.0 1616070_at At4g03520 hypothetical protein LOC100242617 - 3e-111 At2g27600 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) O.I. H.G. S.X.
0.21 24.0 1606813_s_at At4g03520 hypothetical protein LOC100245986 - 9e-77 At5g47200 ATRAB1A O.I. H.G. S.X.
0.12 12.1 AFFX-Vvi-actin-3_c2_s_at At4g03520 actin 1 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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