Co-expression analysis

Gene ID	Zm.9977.1.S1_at
Gene name	hypothetical protein LOC100272895
Homology with Arabidopsis	Similar to At4g03520: ATHM2 (HF=8e+0)
Module size	6 genes
NF	0.14
%ile	9.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.93	Zm.9977.1.S1_at	AY108587.1	hypothetical protein LOC100272895	-	8e+0	At4g03520	ATHM2	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.12374.1.S1_at	BQ577812	-	-	3e+0	At1g66800	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.2505.1.S1_at	BG841722	hypothetical protein LOC100216859	-	4e-5	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.96	Zm.7937.1.A1_at	BM080506	plant viral-response family protein	-	1e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.95	Zm.13665.1.S1_at	AY107083.1	-	-	8e-4	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.94	Zm.4273.2.A1_at	AI665197	heat shock 70 kDa protein 4	-	3e-10	At1g79920	ATP binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.30782.1.S1_at, orthologous to the query gene, Zm.9977.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	93.8	TaAffx.30782.1.S1_at	At4g03520	-	-	2e+1	At5g55200	co-chaperone grpE protein, putative	O.I.	H.G.	S.X.	Please select
0.70	87.2	TaAffx.55935.1.S1_at	At4g03520	-	-	3e+0	At5g39640	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.3	TaAffx.11110.1.S1_x_at	At4g03520	-	-	4e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.58	79.2	TaAffx.78861.1.S1_at	At4g03520	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.57	79.2	TaAffx.114767.1.S1_at	At4g03520	-	-	3e-3	At4g17600	LIL3:1	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.3501.3.A1_at	At4g03520	-	-	3e-1	At5g08330	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.64474.2.S1_at	At4g03520	-	-	3e-1	At3g07490	AGD11 (ARF-GAP domain 11)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.9084.3.S1_at	At4g03520	-	-	1e+1	At5g50050	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.58638.1.S1_at	At4g03520	-	-	4e+0	At1g12805	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.5596.1.S1_at	At4g03520	-	-	3e+0	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.42	60.9	TaAffx.31313.1.S1_at	At4g03520	-	-	1e+1	At3g52561	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.30673.1.S1_at	At4g03520	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.3664.1.S1_at	At4g03520	-	-	2e+0	At2g47710	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.112158.1.S1_at	At4g03520	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.79437.1.S1_at	At4g03520	-	-	3e+0	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.78855.1.S1_at	At4g03520	-	-	5e-2	At1g49930	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.1238.3.S1_a_at	At4g03520	-	-	3e-1	At1g25472	CPuORF54 (Conserved peptide upstream open reading frame 54)	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.18019.2.S1_at	At4g03520	-	-	1e+0	At1g32700	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.3911.2.S1_s_at	At4g03520	-	-	4e+0	At2g44290	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.25400.1.A1_at	At4g03520	-	-	1e-1	At1g62060	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage