Co-expression analysis

Gene ID	Zm.9977.1.S1_at
Gene name	hypothetical protein LOC100272895
Homology with Arabidopsis	Similar to At4g03520: ATHM2 (HF=8e+0)
Module size	6 genes
NF	0.14
%ile	9.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.93	Zm.9977.1.S1_at	AY108587.1	hypothetical protein LOC100272895	-	8e+0	At4g03520	ATHM2	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.12374.1.S1_at	BQ577812	-	-	3e+0	At1g66800	cinnamyl-alcohol dehydrogenase family / CAD family	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.2505.1.S1_at	BG841722	hypothetical protein LOC100216859	-	4e-5	At1g44970	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.96	Zm.7937.1.A1_at	BM080506	plant viral-response family protein	-	1e+0	At5g19140	AILP1	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.95	Zm.13665.1.S1_at	AY107083.1	-	-	8e-4	At4g01810	protein transport protein-related	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.94	Zm.4273.2.A1_at	AI665197	heat shock 70 kDa protein 4	-	3e-10	At1g79920	ATP binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the barley gene, Contig9163_at, orthologous to the query gene, Zm.9977.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	98.7	Contig9163_at	At4g03520	-	-	2e-6	At1g03680	ATHM1	O.I.	H.G.	S.X.	Please select
0.31	38.6	HA07g21r_s_at	At4g03520	-	-	3e+0	At3g20557	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig6650_at	At4g03520	-	-	8e-1	At5g03550	-	O.I.	H.G.	S.X.	Please select
0.10	8.4	Contig12250_at	At4g03520	-	-	1e-4	At1g72080	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig8829_at	At4g03520	-	-	1e-1	At1g18210	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig16700_at	At4g03520	-	-	3e+0	At4g00467	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	HZ56G07r_s_at	At4g03520	-	-	2e+0	At3g01030	nucleic acid binding / transcription factor/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig20954_at	At4g03520	-	-	8e-2	At1g01490	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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