CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9977.1.S1_at

Gene name hypothetical protein LOC100272895
Homology with Arabidopsis Similar to At4g03520: ATHM2 (HF=8e+0)

Module size 6 genes

NF 0.14

%ile 9.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.93 Zm.9977.1.S1_at AY108587.1 hypothetical protein LOC100272895 - 8e+0 At4g03520 ATHM2 O.I. H.G. S.X.
0.27 24.6 0.94 Zm.12374.1.S1_at BQ577812 - - 3e+0 At1g66800 cinnamyl-alcohol dehydrogenase family / CAD family O.I. H.G. S.X.
0.14 7.7 0.95 Zm.2505.1.S1_at BG841722 hypothetical protein LOC100216859 - 4e-5 At1g44970 peroxidase, putative O.I. H.G. S.X.
0.09 4.0 0.96 Zm.7937.1.A1_at BM080506 plant viral-response family protein - 1e+0 At5g19140 AILP1 O.I. H.G. S.X.
0.08 3.4 0.95 Zm.13665.1.S1_at AY107083.1 - - 8e-4 At4g01810 protein transport protein-related O.I. H.G. S.X.
0.08 3.4 0.94 Zm.4273.2.A1_at AI665197 heat shock 70 kDa protein 4 - 3e-10 At1g79920 ATP binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.4 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4 98.5 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5 98.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g03520, orthologous to the query gene, Zm.9977.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.37 45.0 At4g03520 825653 ATHM2 chloroplast localized thioredoxin, similar to prokaryotic types. O.I. H.G. S.X.
0.82 90.9 At1g69390 843271 ATMINE1 (Arabidopsis homologue of bacterial MinE 1) Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery. O.I. H.G. S.X.
0.71 84.2 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA O.I. H.G. S.X.
0.61 76.7 At5g49940 835057 NFU2 (NIFU-LIKE PROTEIN 2) Encodes a protein containing the NFU domain and functions as a molecular scaffold for iron-sulfur cluster assembly and delivery. Homologous to the cyanobacterial CNFU protein and is targeted to the chloroplast. O.I. H.G. S.X.
0.57 73.8 At1g09130 837432 ATP-dependent Clp protease proteolytic subunit, putative F:serine-type endopeptidase activity;P:proteolysis;C:in 6 components;BOPMFV O.I. H.G. S.X.
0.53 68.6 At4g14910 827149 imidazoleglycerol-phosphate dehydratase, putative F:imidazoleglycerol-phosphate dehydratase activity;P:histidine biosynthetic process;C:chloroplast;BOFAPM O.I. H.G. S.X.
0.50 65.3 At1g02560 839433 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). O.I. H.G. S.X.
0.38 46.7 At1g63970 842700 ISPF Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype.Homolog of E. coli IspF O.I. H.G. S.X.
0.37 45.0 At1g12410 837797 CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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