Co-expression analysis

Gene ID	Zm.9904.2.A1_a_at
Gene name	hypothetical protein LOC100193383
Homology with Arabidopsis	Similar to At2g30120: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.05
%ile	2.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.90	Zm.9904.2.A1_a_at	BM334819	hypothetical protein LOC100193383	-	5e+0	At2g30120	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.91	Zm.4447.1.A1_at	AW018210	hypothetical protein LOC100191204	-	2e-1	At3g27330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.94	Zm.3359.1.A1_at	AY106342.1	Hypothetical protein LOC100194208	-	2e+0	At4g00280	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.95	Zm.6688.1.A1_at	BQ538665	hypothetical protein LOC100275476	-	3e+0	At1g68862	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.94	Zm.8656.1.A1_at	BM336261	hypothetical protein LOC100192906	-	4e-2	At5g27440	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.90	Zm.11896.1.A1_s_at	CO530711	SNF1-related protein kinase regulatory subunit beta-1	-	4e+0	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.5	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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