Co-expression analysis

Gene ID	Zm.9901.1.A1_at
Gene name	Hypothetical protein LOC100191704
Homology with Arabidopsis	Similar to At4g05000: VPS28-2 (HF=8e+0)
Module size	12 genes
NF	0.68
%ile	90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.96	Zm.9901.1.A1_at	CF633429	Hypothetical protein LOC100191704	-	8e+0	At4g05000	VPS28-2	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.99	ZmAffx.1006.1.A1_at	AI881370	-	-	3e+0	At4g34470	ASK12 (ARABIDOPSIS SKP1-LIKE 12)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	ZmAffx.229.1.A1_at	AI670241	-	-	5e-2	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.1673.1.A1_at	BM074117	hypothetical protein LOC100278949	-	7e+0	At5g02450	60S ribosomal protein L36 (RPL36C)	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.98	ZmAffx.143.1.S1_at	AI667791	-	-	5e+0	At5g23480	DNA binding	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.99	Zm.12584.3.A1_a_at	CA405318	-	-	1e+0	At3g54363	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.99	Zm.12584.1.A1_at	AF533364.1	water-stress protein	-	2e-5	At2g44710	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.98	Zm.15225.1.A1_at	BM335148	-	-	6e-3	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.3032.1.A1_at	AW134461	AP-1 complex subunit sigma-2	-	1e-7	At4g35410	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.2297.1.A1_at	AW352507	hypothetical protein LOC100192643	-	4e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.5890.1.A1_at	AI664901	-	-	3e+0	At1g24010	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.98	Zm.8888.1.A1_at	BG837427	hypothetical protein LOC100274770	-	6e-6	At4g37830	cytochrome c oxidase-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.1	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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