Co-expression analysis

Gene ID Zm.9891.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g27290: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.75
%ile 95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.9891.1.A1_atBM350582--1e+0At5g27290unknown proteinO.I.H.G.S.X.
0.9199.00.99ZmAffx.786.1.A1_atAI759096--3e-3At1g72450JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)O.I.H.G.S.X.
0.8395.60.99Zm.4625.1.A1_atAI737394--8e-1At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.6785.80.99Zm.8375.1.A1_atBM080176--2e-2At5g25450ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.
0.6785.80.99ZmAffx.925.1.S1_atAI795348--8e-1At1g43171unknown proteinO.I.H.G.S.X.
0.5571.60.99Zm.9555.2.A1_atCK347442--3e+0At2g22241unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.498.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM205423B73xMo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1620189_at, orthologous to the query gene, Zm.9891.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5475.71620189_atAt5g27290hypothetical protein LOC100265424-6e-30At3g08840D-alanine--D-alanine ligase familyO.I.H.G.S.X.
0.5072.71612201_atAt5g27290hypothetical protein LOC100266189-7e-5At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.4464.11620389_atAt5g27290hypothetical protein LOC100252478-2e+0At5g54360zinc finger (C2H2 type) family protein-relatedO.I.H.G.S.X.
0.4158.71610269_atAt5g27290hypothetical protein LOC100253844-4e+0At4g39890AtRABH1c (Arabidopsis Rab GTPase homolog H1c)O.I.H.G.S.X.
0.3954.91618098_atAt5g27290hypothetical protein LOC100244989-8e-1At5g63135unknown proteinO.I.H.G.S.X.
0.3853.61614642_atAt5g27290--6e+0At5g53730harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.
0.3650.71611176_s_atAt5g27290hypothetical protein LOC100260975-4e+0At5g59200pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.3650.71619314_atAt5g27290--3e+0At5g67430GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.3039.41617471_atAt5g27290hypothetical protein LOC100266752-1e+0Atmg00850-O.I.H.G.S.X.
0.2937.71619561_atAt5g27290hypothetical protein LOC100254946-4e+0At4g3386540S ribosomal protein S29 (RPS29C)O.I.H.G.S.X.
0.2428.71619134_atAt5g27290--2e+0At5g53720RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.1718.21618544_atAt5g27290similar to pumilio domain-containing protein PPD1-4e-20At4g25880APUM6 (Arabidopsis Pumilio 6)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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