Co-expression analysis

Gene ID Zm.9891.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g27290: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.75
%ile 95.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.9891.1.A1_atBM350582--1e+0At5g27290unknown proteinO.I.H.G.S.X.
0.9199.00.99ZmAffx.786.1.A1_atAI759096--3e-3At1g72450JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)O.I.H.G.S.X.
0.8395.60.99Zm.4625.1.A1_atAI737394--8e-1At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.6785.80.99Zm.8375.1.A1_atBM080176--2e-2At5g25450ubiquinol-cytochrome C reductase complex 14 kDa protein, putativeO.I.H.G.S.X.
0.6785.80.99ZmAffx.925.1.S1_atAI795348--8e-1At1g43171unknown proteinO.I.H.G.S.X.
0.5571.60.99Zm.9555.2.A1_atCK347442--3e+0At2g22241unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.498.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.198.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM205423B73xMo17 19 DAP endosperm tissue biological replicate 1GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, rbags16o16_s_at, orthologous to the query gene, Zm.9891.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8995.4rbags16o16_s_atAt5g27290--8e+0At5g50270F-box family proteinO.I.H.G.S.X.
0.4762.2Contig21245_atAt5g27290--2e+0At1g78870UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)O.I.H.G.S.X.
0.3849.5Contig16950_atAt5g27290--5e+0At5g09540DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3647.1rbags1i23_s_atAt5g27290--2e-16At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.3647.1Contig3178_s_atAt5g27290--5e-35At2g27020PAG1O.I.H.G.S.X.
0.3545.1Contig15562_atAt5g27290--6e-6At3g12270PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3)O.I.H.G.S.X.
0.3443.6HA27E10r_x_atAt5g27290--3e-5At2g3939060S ribosomal protein L35 (RPL35B)O.I.H.G.S.X.
0.3443.6Contig18503_atAt5g27290--1e-1At4g01995unknown proteinO.I.H.G.S.X.
0.3342.6EBpi01_SQ001_K06_s_atAt5g27290--3e-12At4g1500060S ribosomal protein L27 (RPL27C)O.I.H.G.S.X.
0.3240.3HU09E20u_s_atAt5g27290--3e+0At3g55820-O.I.H.G.S.X.
0.3240.3Contig4938_s_atAt5g27290--8e-47At1g67280lactoylglutathione lyase, putative / glyoxalase I, putativeO.I.H.G.S.X.
0.3240.3Contig8614_atAt5g27290--1e-14At2g18750calmodulin-binding proteinO.I.H.G.S.X.
0.3240.3Contig12493_atAt5g27290--5e-8At1g54115CCX4 (CATION CALCIUM EXCHANGER 4)O.I.H.G.S.X.
0.3138.6Contig10079_atAt5g27290--3e-18At3g53580diaminopimelate epimerase family proteinO.I.H.G.S.X.
0.3037.0HY09G23u_s_atAt5g27290--8e-1At5g19510elongation factor 1B alpha-subunit 2 (eEF1Balpha2)O.I.H.G.S.X.
0.3037.0HY10F15u_s_atAt5g27290--7e+0At3g49550unknown proteinO.I.H.G.S.X.
0.3037.0HS08B03u_s_atAt5g27290--3e-22At5g5842040S ribosomal protein S4 (RPS4D)O.I.H.G.S.X.
0.2835.5Contig23027_atAt5g27290--1e-1At3g26790FUS3 (FUSCA 3)O.I.H.G.S.X.
0.2732.1Contig10232_atAt5g27290--1e-1At5g65840-O.I.H.G.S.X.
0.2732.1Contig5619_atAt5g27290--3e-3At1g06690aldo/keto reductase family proteinO.I.H.G.S.X.
0.2630.4Contig23141_atAt5g27290--1e+0At2g42610LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)O.I.H.G.S.X.
0.2528.9Contig19196_atAt5g27290--1e+0At3g01230unknown proteinO.I.H.G.S.X.
0.2224.2Contig9332_atAt5g27290--6e+0At3g01470ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1)O.I.H.G.S.X.
0.1919.6Contig10520_s_atAt5g27290--3e-1At4g39990RABA4B (RAB GTPASE HOMOLOG A4B)O.I.H.G.S.X.
0.1615.3Contig10818_atAt5g27290--1e-2At1g47970unknown proteinO.I.H.G.S.X.
0.097.4Contig6545_atAt5g27290--1e-2At1g14250nucleoside phosphatase family protein / GDA1/CD39 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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