Co-expression analysis

Gene ID	Zm.9890.1.A1_at
Gene name	XBAT32
Homology with Arabidopsis	Similar to At2g32300: UCC1 (UCLACYANIN 1) (HF=5e+0)
Module size	6 genes
NF	0.19
%ile	13.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.96	Zm.9890.1.A1_at	BM347924	XBAT32	-	5e+0	At2g32300	UCC1 (UCLACYANIN 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.4852.2.S1_at	AI770453	hypothetical protein LOC100192969	-	3e+0	At3g16300	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.2558.1.S1_at	CF011949	aldose reductase	-	5e-8	At2g37770	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.96	Zm.15899.2.A1_x_at	BM334937	hypothetical protein LOC100193182	-	5e-1	At1g56555	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.96	Zm.1029.1.S1_at	BE640121	-	-	7e-1	At5g09460	transcription factor/ transcription regulator	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.96	Zm.13656.1.S1_at	AY107165.1	-	-	8e-3	At1g24490	ALB4 (ALBINA 4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4	94.9	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.72844.1.S1_at, orthologous to the query gene, Zm.9890.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.9	GmaAffx.72844.1.S1_at	At2g32300	-	-	2e+0	At1g66650	seven in absentia (SINA) protein, putative	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.17703.1.A1_at	At2g32300	-	-	4e+0	At5g64770	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.5308.1.S1_s_at	At2g32300	-	-	3e-5	At4g28440	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.11133.2.S1_at	At2g32300	-	-	2e-37	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.2729.1.S1_at	At2g32300	-	-	5e-60	At1g22920	CSN5A (COP9 SIGNALOSOME 5A)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.84855.1.S1_at	At2g32300	-	-	1e-1	At3g45180	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.441.1.S1_at	At2g32300	-	-	2e-33	At1g31340	RUB1 (RELATED TO UBIQUITIN 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	GmaAffx.83444.1.A1_at	At2g32300	-	-	3e-2	At2g03430	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.16295.1.A1_at	At2g32300	-	-	9e-1	At3g53740	60S ribosomal protein L36 (RPL36B)	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.73636.1.S1_at	At2g32300	-	-	2e+0	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.448.2.S1_at	At2g32300	-	-	2e-27	At3g44600	CYP71 (CYCLOPHILIN71)	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.2459.1.S1_at	At2g32300	-	-	2e-52	At2g18740	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.47497.1.S1_at	At2g32300	-	-	1e+0	At5g26848	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.42109.1.S1_at	At2g32300	-	-	6e-1	At1g50980	F-box family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.2911.1.S1_at	At2g32300	-	-	4e-58	At4g26110	NAP1	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.11768.1.S1_at	At2g32300	-	-	8e+0	At5g52960	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.8037.1.S1_at	At2g32300	-	-	3e-10	At3g11830	chaperonin, putative	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.15638.1.S1_at	At2g32300	-	-	2e+0	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.36	50.8	GmaAffx.59686.1.S1_at	At2g32300	-	-	2e-4	At2g27020	PAG1	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.84109.1.A1_at	At2g32300	-	-	3e+0	At3g56900	aladin-related / adracalin-related	O.I.	H.G.	S.X.	Please select
0.32	43.7	GmaAffx.54810.1.S1_at	At2g32300	-	-	3e-14	At5g53860	emb2737 (embryo defective 2737)	O.I.	H.G.	S.X.	Please select
0.31	42.2	GmaAffx.51048.1.S1_at	At2g32300	-	-	6e-5	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.10674.1.S1_at	At2g32300	-	-	4e-17	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.7042.1.S1_at	At2g32300	-	-	3e-2	At5g39170	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage