Co-expression analysis

Gene ID	Zm.9879.2.S1_at
Gene name	vignain
Homology with Arabidopsis	Similar to At4g35350: XCP1 (XYLEM CYSTEINE PEPTIDASE 1) (HF=5e-5)
Module size	6 genes
NF	0.67
%ile	89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.16907.1.S1_at	AI691771	-	-	4e-50	At3g18000	XPL1 (XIPOTL 1)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.2903.1.A1_at	CF019919	hypothetical protein LOC100274564	-	9e-8	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.18323.1.A1_a_at	CO532638	hypothetical protein LOC100193167	-	5e-1	At4g27120	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.4434.1.S1_at	CA402082	-	-	2e+0	At4g10925	F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1608456_at, orthologous to the query gene, Zm.9879.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1608456_at	At4g35350	hypothetical protein LOC100250141	-	4e-14	At5g50260	cysteine proteinase, putative	O.I.	H.G.	S.X.	Please select
0.80	93.6	1612509_at	At4g35350	polygalacturonase	-	5e-6	At5g14650	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please select
0.77	92.3	1613376_at	At4g35350	polygalacturonase	-	8e-9	At5g14650	polygalacturonase, putative / pectinase, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	1622607_at	At4g35350	hypothetical protein LOC100250080	-	1e-8	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select
0.61	83.2	1614387_s_at	At4g35350	hypothetical protein LOC100250080	-	1e-8	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1610980_at	At4g35350	hypothetical protein LOC100247265	-	4e-4	At1g12100	lipid binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage