CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9879.2.S1_at

Gene name vignain
Homology with Arabidopsis Similar to At4g35350: XCP1 (XYLEM CYSTEINE PEPTIDASE 1) (HF=5e-5)

Module size 6 genes

NF 0.67

%ile 89.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.97 Zm.9879.2.S1_at CA404875 vignain - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) O.I. H.G. S.X.
0.80 94.0 0.98 Zm.16907.1.S1_at AI691771 - - 4e-50 At3g18000 XPL1 (XIPOTL 1) O.I. H.G. S.X.
0.55 71.6 0.97 Zm.2903.1.A1_at CF019919 hypothetical protein LOC100274564 - 9e-8 At5g62000 ARF2 (AUXIN RESPONSE FACTOR 2) O.I. H.G. S.X.
0.50 65.7 0.97 Zm.18323.1.A1_a_at CO532638 hypothetical protein LOC100193167 - 5e-1 At4g27120 unknown protein O.I. H.G. S.X.
0.50 65.7 0.98 Zm.19155.2.A1_x_at CO526374 - - 7e-9 At4g23650 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6) O.I. H.G. S.X.
0.43 52.8 0.97 Zm.4434.1.S1_at CA402082 - - 2e+0 At4g10925 F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.0 97.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1 96.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g35350, orthologous to the query gene, Zm.9879.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At4g35350 829688 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) tracheary element vacuolar protein O.I. H.G. S.X.
0.86 93.1 At5g51890 835264 peroxidase encodes peroxidase involved in the lignification of tracheary elements (TE) in roots O.I. H.G. S.X.
0.83 91.4 At1g20850 838677 XCP2 (xylem cysteine peptidase 2) F:peptidase activity, cysteine-type peptidase activity;P:proteolysis, developmental programmed cell death;C:cell wall;MOPVBAF O.I. H.G. S.X.
0.81 90.4 At4g08160 826365 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. H.G. S.X.
0.80 89.8 At1g58370 842206 RXF12 Encodes a protein with xylanase activity. O.I. H.G. S.X.
0.80 89.8 At5g07080 830599 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.77 88.0 At5g03260 831887 LAC11 (laccase 11) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. H.G. S.X.
0.74 86.1 At1g47410 841146 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.73 85.5 At5g40020 833999 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PFMBO O.I. H.G. S.X.
0.71 84.2 At5g19870 832108 unknown protein F:unknown;P:unknown;C:endomembrane system;MP O.I. H.G. S.X.
0.71 84.2 At5g60720 836193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM O.I. H.G. S.X.
0.67 81.6 At5g01930 831699 (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOA O.I. H.G. S.X.
0.65 79.6 At5g60020 836124 LAC17 (laccase 17) putative laccase, a member of laccase family of genes (17 members in Arabidopsis). O.I. H.G. S.X.
0.64 78.9 At3g62160 825389 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. H.G. S.X.
0.61 76.7 At5g01360 830298 - F:unknown;P:unknown;C:unknown;PMF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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