Co-expression analysis

Gene ID Zm.9803.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g64740: TUA1 (ALPHA-1 TUBULIN) (HF=1e+0)
Module size 6 genes
NF 0.76
%ile 95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.95Zm.9803.1.A1_atBM339320--1e+0At1g64740TUA1 (ALPHA-1 TUBULIN)O.I.H.G.S.X.
0.7389.90.93ZmAffx.739.1.S1_atAI740090--8e-1At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.
0.7188.20.94Zm.4586.1.A1_atAW499317--4e-2At2g06420unknown proteinO.I.H.G.S.X.
0.6785.80.94Zm.14498.2.A1_atAI691791--2e-4At1g26770ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)O.I.H.G.S.X.
0.6785.80.95Zm.4914.1.S1_atCD437635--8e-4At5g49330AtMYB111 (myb domain protein 111)O.I.H.G.S.X.
0.5571.60.94Zm.4988.1.A1_atAY111117.1Hypothetical protein LOC100193664-2e+0At5g20900JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7188.20.91Zm.7293.1.S1_atBI675120--6e+0At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)O.I.H.G.S.X.
0.6381.10.89Zm.10310.1.A1_atCF629249hypothetical protein LOC100191326-4e-2At4g39540shikimate kinase family proteinO.I.H.G.S.X.
0.5775.10.86Zm.2028.1.S1_atAY105274.1acyl-protein thioesterase 1-4e-5At4g22300SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1)O.I.H.G.S.X.
0.5571.60.90Zm.4342.1.S1_s_atAI795683--3e-1At1g17080unknown proteinO.I.H.G.S.X.
0.5065.70.92Zm.5662.1.S1_atAY109367.1--2e+0At1g67148unknown proteinO.I.H.G.S.X.
0.5065.70.92Zm.4468.3.S1_atCF627497phospho-2-dehydro-3-deoxyheptonate aldolase 1-4e-37At1g224102-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putativeO.I.H.G.S.X.
0.4455.70.96Zm.14435.1.S1_atAY109360.160S ribosomal protein L22-2-3e-35At3g0556060S ribosomal protein L22-2 (RPL22B)O.I.H.G.S.X.
0.4352.80.92Zm.9042.1.A1_atAY044158.1hypothetical protein LOC100273864-7e-5At3g51190structural constituent of ribosomeO.I.H.G.S.X.
0.4048.50.88Zm.4089.2.S1_atBQ619190--3e-6At5g26340MSS1O.I.H.G.S.X.
0.4048.50.91Zm.6188.3.A1_a_atCA398347hypothetical protein LOC100194248-2e+1At5g24560AtPP2-B12 (Phloem protein 2-B12)O.I.H.G.S.X.
0.3945.60.85Zm.6802.1.S1_atAI737806glycogen synthase kinase-3 MsK-3-2e-42At5g14640SK13 (SHAGGY-LIKE KINASE 13)O.I.H.G.S.X.
0.3641.30.93Zm.14531.1.S1_atAY111968.1invertase cell wall3-1e-12At3g52600AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)O.I.H.G.S.X.
0.3641.30.87Zm.4343.1.A1_atAY110641.1hypothetical protein LOC100193036-2e+0At5g28750thylakoid assembly protein, putativeO.I.H.G.S.X.
0.3336.00.86Zm.406.2.A1_a_atCK348246NADPH producing dehydrogenase of the oxidative pentose phosphate pathway-1e-12At3g023606-phosphogluconate dehydrogenase family proteinO.I.H.G.S.X.
0.3336.00.91Zm.7961.1.A1_atBM268915hypothetical protein LOC100275228-3e-1At2g36470unknown proteinO.I.H.G.S.X.
0.3131.60.93Zm.5980.1.S1_atAI739740thioredoxin reductase 2-5e-11At2g17420NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)O.I.H.G.S.X.
0.2928.10.90Zm.10092.1.A1_atAY105279.1hypothetical protein LOC100217059-7e-3At3g43520unknown proteinO.I.H.G.S.X.
0.2928.10.90Zm.2591.2.A1_a_atBG836981autophagy-related 8b-2e-52At1g62040ATG8C (autophagy 8c)O.I.H.G.S.X.
0.2928.10.94Zm.4720.1.S1_atAY108931.1--7e-2At5g13910LEP (LEAFY PETIOLE)O.I.H.G.S.X.
0.2622.70.88Zm.13777.1.A1_atCK347797--8e-8At1g27435unknown proteinO.I.H.G.S.X.
0.2521.30.93Zm.6314.1.A1_atAI691362--2e+0At5g18150unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.499.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.099.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.998.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM253254ZM_24h_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
9.998.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM253255ZM_24h_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
6.297.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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