Co-expression analysis

Gene ID	Zm.9803.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g64740: TUA1 (ALPHA-1 TUBULIN) (HF=1e+0)
Module size	6 genes
NF	0.76
%ile	95.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.95	Zm.9803.1.A1_at	BM339320	-	-	1e+0	At1g64740	TUA1 (ALPHA-1 TUBULIN)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.93	ZmAffx.739.1.S1_at	AI740090	-	-	8e-1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.94	Zm.4586.1.A1_at	AW499317	-	-	4e-2	At2g06420	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.14498.2.A1_at	AI691791	-	-	2e-4	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.4914.1.S1_at	CD437635	-	-	8e-4	At5g49330	AtMYB111 (myb domain protein 111)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.94	Zm.4988.1.A1_at	AY111117.1	Hypothetical protein LOC100193664	-	2e+0	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.4	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
9.9	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.148985.1.A1_s_at, orthologous to the query gene, Zm.9803.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	PtpAffx.148985.1.A1_s_at	At1g64740	hypothetical protein	-	4e-7	At3g17340	binding / protein transporter	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.17792.2.A1_a_at	At1g64740	hypothetical protein	-	2e+0	At5g25415	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.223240.1.S1_at	At1g64740	hypothetical protein	-	1e-42	At2g40360	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.3747.4.A1_a_at	At1g64740	-	-	4e+0	At4g03120	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.209491.1.S1_at	At1g64740	hypothetical protein	-	4e-78	At3g10690	DNA gyrase subunit A family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.8468.2.S1_at	At1g64740	hypothetical protein	-	2e-53	At3g17465	RPL3P (RIBOSOMAL PROTEIN L3 PLASTID)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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