Co-expression analysis

Gene ID Zm.98.1.S1_at
Gene name 3-phosphoshikimate 1-carboxyvinyltransferase
Homology with ArabidopsisSimilar to At1g48860: 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative (HF=2e-48)
Module size 40 genes
NF 0.32
%ile 31.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9799.90.98Zm.98.1.S1_atAY106729.13-phosphoshikimate 1-carboxyvinyltransferase-2e-48At1g488603-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putativeO.I.H.G.S.X.
0.6279.80.99ZmAffx.20.1.S1_atAI600385--3e+0At4g02550unknown proteinO.I.H.G.S.X.
0.5267.30.99Zm.1128.1.S1_atBM736430--3e+0At1g27130ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)O.I.H.G.S.X.
0.5166.40.99Zm.3180.1.A1_atAW179477--7e-1At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.5166.40.99ZmAffx.1194.1.A1_atBE025369--4e+0At5g59990-O.I.H.G.S.X.
0.4961.90.98Zm.18815.1.A1_atCO527279hypothetical protein LOC100191886-2e+0At4g12530protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4658.40.99Zm.6284.1.S1_atAI691250hypothetical protein LOC100194329-1e+0At5g22035-O.I.H.G.S.X.
0.4658.40.99ZmAffx.228.1.A1_atAI670240--5e-2At5g59000zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4658.40.99Zm.15550.2.A1_atCA404478protein phosphatase 2C-7e-13At5g02760protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.4455.70.98ZmAffx.742.1.S1_atAI740139--3e+0At1g10650protein binding / zinc ion bindingO.I.H.G.S.X.
0.4455.70.99Zm.12306.1.S1_atCO517988hypothetical protein LOC100216558-5e-2At5g19680leucine-rich repeat family proteinO.I.H.G.S.X.
0.4352.80.99ZmAffx.1083.1.A1_atAI974922--1e+0At1g59830PP2A-1O.I.H.G.S.X.
0.4352.80.99Zm.6592.1.A1_atAI467742kelch motif family protein-2e-2At1g51540-O.I.H.G.S.X.
0.4149.70.99ZmAffx.607.1.A1_atAI715035--3e+0At1g78150unknown proteinO.I.H.G.S.X.
0.3844.20.99Zm.2368.1.S1_atAY109497.1plastidic phosphate translocator-like protein1-4e-21At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.3844.20.98Zm.18127.1.S1_atCN845217membrin 11-1e-8At5g50440MEMB12 (MEMBRIN 12)O.I.H.G.S.X.
0.3844.20.98Zm.7327.1.A1_atAF289256.1nuclear matrix protein 1-4e-2At5g17620-O.I.H.G.S.X.
0.3641.30.99Zm.12679.1.S1_atBU571579hypothetical protein LOC100217156-7e-1At5g42510disease resistance-responsive family proteinO.I.H.G.S.X.
0.3538.90.99Zm.11779.1.A1_atCO527258hypothetical protein LOC100217298-3e+0At3g47800aldose 1-epimerase family proteinO.I.H.G.S.X.
0.3538.90.99Zm.6719.1.A1_atAI395930--8e-1At4g01960unknown proteinO.I.H.G.S.X.
0.3437.20.99Zm.583.1.S1_atAF305892.1tangled1-3e-1At1g21350antioxidant/ oxidoreductaseO.I.H.G.S.X.
0.3437.20.99ZmAffx.1019.1.S1_atAI881532--3e+0At2g29070ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.3336.00.99ZmAffx.186.1.A1_atAI668363hypothetical protein LOC100217123-6e-5At5g19690STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)O.I.H.G.S.X.
0.3233.40.99Zm.6559.1.A1_atCF051688--3e-14At5g26830threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)O.I.H.G.S.X.
0.3233.40.99Zm.13412.1.S1_x_atCF630246--2e-7At2g36230APG10 (ALBINO AND PALE GREEN 10)O.I.H.G.S.X.
0.3131.60.99Zm.4299.1.S1_atCF046651hypothetical protein LOC100279924-5e-14At3g21630CERK1 (CHITIN ELICITOR RECEPTOR KINASE 1)O.I.H.G.S.X.
0.2928.10.99Zm.15499.1.S1_atAY107766.1--3e-17At1g10940SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)O.I.H.G.S.X.
0.2928.10.99Zm.17513.1.A1_atBM074532MFP1 attachment factor 1-5e+0At1g22840CYTC-1 (CYTOCHROME C-1)O.I.H.G.S.X.
0.2928.10.98Zm.19022.1.S1_atCO526898hypothetical protein LOC100273481-7e-1At5g06570hydrolaseO.I.H.G.S.X.
0.2622.70.99Zm.6376.1.A1_atAY106982.1--2e-1At1g68560XYL1 (ALPHA-XYLOSIDASE 1)O.I.H.G.S.X.
0.2521.30.98Zm.878.2.S1_atCF01626760S ribosomal protein L35-4e-19At5g0261060S ribosomal protein L35 (RPL35D)O.I.H.G.S.X.
0.2521.30.99Zm.1693.1.A1_atBM382165--4e-3At3g55670-O.I.H.G.S.X.
0.2419.80.99Zm.14014.1.A1_atCF050089NADH-ubiquinone oxidoreductase 23 kDa subunit-2e-62At1g79010NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)O.I.H.G.S.X.
0.1912.80.99Zm.13449.1.A1_atCF043720hypothetical protein LOC100279539-5e+0At5g07600oleosin / glycine-rich proteinO.I.H.G.S.X.
0.1710.60.99Zm.10554.1.A1_atCA398680--3e-10At2g44090-O.I.H.G.S.X.
0.169.40.99Zm.13054.1.A1_atCA403903hypothetical protein LOC100273794-9e-6At2g43080AT-P4H-1 (A. THALIANA P4H ISOFORM 1)O.I.H.G.S.X.
0.147.70.99Zm.9215.1.A1_atBM336047--2e-1At1g29860WRKY71O.I.H.G.S.X.
0.147.70.99ZmAffx.118.1.S1_atAI665643--8e-1At5g59470PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.147.70.99ZmAffx.509.1.A1_atAI691977--3e+0At2g17740DC1 domain-containing proteinO.I.H.G.S.X.
0.094.00.99ZmAffx.261.1.S1_atAI670366--8e-1At1g03440leucine-rich repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.897.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.692.9GSM206301Upper pulvinus 5 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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