CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9745.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g24570: unknown protein (HF=2e+1)

Module size 6 genes

NF 0.62

%ile 83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 75.1 0.94 Zm.9745.1.A1_at BM341408 - - 2e+1 At5g24570 unknown protein O.I. H.G. S.X.
0.73 89.9 0.95 Zm.652.1.S1_at AY029559.1 methyl binding domain - 2e-1 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) O.I. H.G. S.X.
0.67 85.8 0.94 Zm.1079.6.A1_at CF634247 carbonic anhydrase - 5e-1 At1g56550 UDP-xylosyltransferase O.I. H.G. S.X.
0.67 85.8 0.95 Zm.6364.1.S1_at T20372 - - 8e-1 At2g22060 - O.I. H.G. S.X.
0.47 59.9 0.94 Zm.15780.1.A1_at CD484576 - - 4e+0 At3g01472 CPuORF33 (Conserved peptide upstream open reading frame 33) O.I. H.G. S.X.
0.47 59.9 0.94 Zm.19028.1.S1_at T18786 hypothetical protein LOC100192863 - 4e-2 At4g19270 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.57	75.1	0.94	Zm.9745.1.A1_at	BM341408	-	-	2e+1	At5g24570	unknown protein	O.I.	H.G.	S.X.
0.73	89.9	0.95	Zm.652.1.S1_at	AY029559.1	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.
0.67	85.8	0.94	Zm.1079.6.A1_at	CF634247	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	O.I.	H.G.	S.X.
0.67	85.8	0.95	Zm.6364.1.S1_at	T20372	-	-	8e-1	At2g22060	-	O.I.	H.G.	S.X.
0.47	59.9	0.94	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	O.I.	H.G.	S.X.
0.47	59.9	0.94	Zm.19028.1.S1_at	T18786	hypothetical protein LOC100192863	-	4e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1 98.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
14.7	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the rice gene, Os02g0811200, orthologous to the query gene, Zm.9745.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os02g0811200 At5g24570 - EGF-like calcium-binding domain containing protein 1e-3 At1g21250 WAK1 (CELL WALL-ASSOCIATED KINASE) O.I. H.G. S.X.
0.67 87.2 Os02g0288700 At5g24570 - ABC transporter related domain containing protein 9e-15 At3g13100 ATMRP7 O.I. H.G. S.X.
0.65 83.8 Os01g0928600 At5g24570 - Serine palmitoyltransferase 5e-11 At3g48780 SPT1 (SERINE PALMITOYLTRANSFERASE 1) O.I. H.G. S.X.
0.58 77.0 Os03g0429900 At5g24570 - Nucleic acid-binding OB-fold domain containingprotein 1e-1 At3g57320 unknown protein O.I. H.G. S.X.
0.57 77.0 Os07g0426600 At5g24570 - - 7e-1 At2g40450 speckle-type POZ protein-related O.I. H.G. S.X.
0.56 76.3 Os12g0170000 At5g24570 - - 3e+0 At2g39820 eukaryotic translation initiation factor 6, putative / eIF-6, putative O.I. H.G. S.X.
0.56 76.3 Os04g0158600 At5g24570 - - 2e+0 At4g24230 ACBP3 (ACYL-COA-BINDING DOMAIN 3) O.I. H.G. S.X.
0.55 73.7 Os07g0238400 At5g24570 - - 4e+0 Atmg00740 - O.I. H.G. S.X.
0.55 73.7 Os04g0246700 At5g24570 - - 2e-1 At1g47410 unknown protein O.I. H.G. S.X.
0.53 71.3 Os05g0326900 At5g24570 - - 4e-1 At2g22440 - O.I. H.G. S.X.
0.53 71.3 Os07g0270800 At5g24570 - - 3e-1 At4g19080 unknown protein O.I. H.G. S.X.
0.52 69.6 Os06g0502800 At5g24570 - Hypothetical plant protein family protein 6e-2 At3g57320 unknown protein O.I. H.G. S.X.
0.51 68.7 Os12g0412200 At5g24570 - - 3e-1 At3g57670 NTT (NO TRANSMITTING TRACT) O.I. H.G. S.X.
0.50 68.0 Os04g0591600 At5g24570 - - 3e+0 At4g08874 - O.I. H.G. S.X.
0.50 68.0 Os04g0483100 At5g24570 - - 8e-1 At2g24400 auxin-responsive protein, putative / small auxin up RNA (SAUR_D) O.I. H.G. S.X.
0.50 68.0 Os12g0275666 At5g24570 - - 7e+0 At5g22870 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related O.I. H.G. S.X.
0.49 64.4 Os10g0434600 At5g24570 - - 2e+0 At5g64850 unknown protein O.I. H.G. S.X.
0.48 63.7 Os02g0657500 At5g24570 - - 4e-1 At4g18580 unknown protein O.I. H.G. S.X.
0.48 63.7 Os12g0434800 At5g24570 - - 6e-1 At4g03160 - O.I. H.G. S.X.
0.48 63.7 Os01g0336100 At5g24570 - - 4e-1 At5g12030 AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A) O.I. H.G. S.X.
0.48 63.7 Os04g0354200 At5g24570 - FAR1 domain containing protein 3e-1 At3g10400 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.48 63.7 Os09g0105100 At5g24570 - - 1e+0 At2g43230 serine/threonine protein kinase, putative O.I. H.G. S.X.
0.47 62.3 Os12g0418800 At5g24570 - - 2e+0 At3g22300 RPS10 (RIBOSOMAL PROTEIN S10) O.I. H.G. S.X.
0.46 60.9 Os07g0430200 At5g24570 - Hypothetical protein 7e+0 At4g18580 unknown protein O.I. H.G. S.X.
0.46 60.9 Os10g0191000 At5g24570 - RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein 8e-1 At1g50530 - O.I. H.G. S.X.
0.46 60.9 Os04g0316800 At5g24570 - FAR1 domain containing protein 2e+0 At1g04190 tetratricopeptide repeat (TPR)-containing protein O.I. H.G. S.X.
0.45 58.8 Os02g0604900 At5g24570 - - 4e-1 At1g14455 unknown protein O.I. H.G. S.X.
0.43 55.4 Os11g0231900 At5g24570 - - 2e-1 At3g57930 unknown protein O.I. H.G. S.X.
0.42 53.9 Os06g0575500 At5g24570 - - 1e+0 At5g61605 unknown protein O.I. H.G. S.X.
0.41 52.4 Os07g0586400 At5g24570 - - 1e+0 At3g58180 PBS lyase HEAT-like repeat-containing protein O.I. H.G. S.X.
0.41 52.4 Os03g0596300 At5g24570 - Endonuclease/exonuclease/phosphatase familyprotein 6e+0 At5g16950 unknown protein O.I. H.G. S.X.
0.39 48.3 Os01g0885500 At5g24570 - Conserved hypothetical protein 4e+0 At5g53742 - O.I. H.G. S.X.
0.36 44.0 Os08g0154100 At5g24570 - - 4e-1 At4g18580 unknown protein O.I. H.G. S.X.
0.36 44.0 Os08g0455200 At5g24570 - - 4e+0 At5g47330 palmitoyl protein thioesterase family protein O.I. H.G. S.X.
0.32 36.3 Os01g0780100 At5g24570 - - 1e+0 At1g52180 major intrinsic family protein / MIP family protein O.I. H.G. S.X.
0.32 36.3 Os05g0297300 At5g24570 - Hypothetical protein 9e-1 At1g03070 glutamate binding O.I. H.G. S.X.
0.24 22.4 Os08g0519350 At5g24570 - - 2e-1 At5g47080 CKB1 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	Os02g0811200	At5g24570	-	EGF-like calcium-binding domain containing protein	1e-3	At1g21250	WAK1 (CELL WALL-ASSOCIATED KINASE)	O.I.	H.G.	S.X.
0.67	87.2	Os02g0288700	At5g24570	-	ABC transporter related domain containing protein	9e-15	At3g13100	ATMRP7	O.I.	H.G.	S.X.
0.65	83.8	Os01g0928600	At5g24570	-	Serine palmitoyltransferase	5e-11	At3g48780	SPT1 (SERINE PALMITOYLTRANSFERASE 1)	O.I.	H.G.	S.X.
0.58	77.0	Os03g0429900	At5g24570	-	Nucleic acid-binding OB-fold domain containingprotein	1e-1	At3g57320	unknown protein	O.I.	H.G.	S.X.
0.57	77.0	Os07g0426600	At5g24570	-	-	7e-1	At2g40450	speckle-type POZ protein-related	O.I.	H.G.	S.X.
0.56	76.3	Os12g0170000	At5g24570	-	-	3e+0	At2g39820	eukaryotic translation initiation factor 6, putative / eIF-6, putative	O.I.	H.G.	S.X.
0.56	76.3	Os04g0158600	At5g24570	-	-	2e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	O.I.	H.G.	S.X.
0.55	73.7	Os07g0238400	At5g24570	-	-	4e+0	Atmg00740	-	O.I.	H.G.	S.X.
0.55	73.7	Os04g0246700	At5g24570	-	-	2e-1	At1g47410	unknown protein	O.I.	H.G.	S.X.
0.53	71.3	Os05g0326900	At5g24570	-	-	4e-1	At2g22440	-	O.I.	H.G.	S.X.
0.53	71.3	Os07g0270800	At5g24570	-	-	3e-1	At4g19080	unknown protein	O.I.	H.G.	S.X.
0.52	69.6	Os06g0502800	At5g24570	-	Hypothetical plant protein family protein	6e-2	At3g57320	unknown protein	O.I.	H.G.	S.X.
0.51	68.7	Os12g0412200	At5g24570	-	-	3e-1	At3g57670	NTT (NO TRANSMITTING TRACT)	O.I.	H.G.	S.X.
0.50	68.0	Os04g0591600	At5g24570	-	-	3e+0	At4g08874	-	O.I.	H.G.	S.X.
0.50	68.0	Os04g0483100	At5g24570	-	-	8e-1	At2g24400	auxin-responsive protein, putative / small auxin up RNA (SAUR_D)	O.I.	H.G.	S.X.
0.50	68.0	Os12g0275666	At5g24570	-	-	7e+0	At5g22870	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.
0.49	64.4	Os10g0434600	At5g24570	-	-	2e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	Os02g0657500	At5g24570	-	-	4e-1	At4g18580	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	Os12g0434800	At5g24570	-	-	6e-1	At4g03160	-	O.I.	H.G.	S.X.
0.48	63.7	Os01g0336100	At5g24570	-	-	4e-1	At5g12030	AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)	O.I.	H.G.	S.X.
0.48	63.7	Os04g0354200	At5g24570	-	FAR1 domain containing protein	3e-1	At3g10400	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.48	63.7	Os09g0105100	At5g24570	-	-	1e+0	At2g43230	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.47	62.3	Os12g0418800	At5g24570	-	-	2e+0	At3g22300	RPS10 (RIBOSOMAL PROTEIN S10)	O.I.	H.G.	S.X.
0.46	60.9	Os07g0430200	At5g24570	-	Hypothetical protein	7e+0	At4g18580	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	Os10g0191000	At5g24570	-	RNA-directed DNA polymerase (Reversetranscriptase) domain containing protein	8e-1	At1g50530	-	O.I.	H.G.	S.X.
0.46	60.9	Os04g0316800	At5g24570	-	FAR1 domain containing protein	2e+0	At1g04190	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.45	58.8	Os02g0604900	At5g24570	-	-	4e-1	At1g14455	unknown protein	O.I.	H.G.	S.X.
0.43	55.4	Os11g0231900	At5g24570	-	-	2e-1	At3g57930	unknown protein	O.I.	H.G.	S.X.
0.42	53.9	Os06g0575500	At5g24570	-	-	1e+0	At5g61605	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	Os07g0586400	At5g24570	-	-	1e+0	At3g58180	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.41	52.4	Os03g0596300	At5g24570	-	Endonuclease/exonuclease/phosphatase familyprotein	6e+0	At5g16950	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	Os01g0885500	At5g24570	-	Conserved hypothetical protein	4e+0	At5g53742	-	O.I.	H.G.	S.X.
0.36	44.0	Os08g0154100	At5g24570	-	-	4e-1	At4g18580	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	Os08g0455200	At5g24570	-	-	4e+0	At5g47330	palmitoyl protein thioesterase family protein	O.I.	H.G.	S.X.
0.32	36.3	Os01g0780100	At5g24570	-	-	1e+0	At1g52180	major intrinsic family protein / MIP family protein	O.I.	H.G.	S.X.
0.32	36.3	Os05g0297300	At5g24570	-	Hypothetical protein	9e-1	At1g03070	glutamate binding	O.I.	H.G.	S.X.
0.24	22.4	Os08g0519350	At5g24570	-	-	2e-1	At5g47080	CKB1	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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Gene ID	Zm.9745.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g24570: unknown protein (HF=2e+1)
Module size	6 genes
NF	0.62
%ile	83.2

Co-expression analysis

Gene ID Zm.9745.1.A1_at Gene name Homology with ArabidopsisSimilar to At5g24570: unknown protein (HF=2e+1) Module size 6 genes NF 0.62 %ile 83.2

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.9745.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g24570: unknown protein (HF=2e+1)

Module size 6 genes

NF 0.62

%ile 83.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera